Update in progress: note to all users. FAIRsharing is always available for you to search and discover databases, standards and data policies. However, for producers of these resources who maintain or wish to add new records, please note that editing is disabled until September while we migrate our data to our new, improved system. Read our blog post or get in touch with us for more details.
21/09/21 Ongoing Network Maintenance: From the 21st of September FAIRsharing may be offline at various point during the day; we apologise for any inconvenience.

ready FlyAtlas 2

General Information
FlyAtlas 2 is the RNA-Seq successor to the original FlyAtlas (which was based on microarray analysis). Specifically, FlyAtlas 2 now provides access to: transcript information, sex-specific data for adult somatic tissues, and micro-RNA genes. FlyAtlas2 supports search by gene, category or tissue; and functionality has been improved through mobile support and the option to download results in spreadsheet format. Gene coverage has been extended by the inclusion of microRNAs and many of the RNA genes included in Release 6 of the Drosophila reference genome. The web interface has been modified to accommodate the extra data, but at the same time has been adapted for viewing on small mobile devices. Users also have access to the RNA-Seq reads displayed alongside the annotated Drosophila genome in the (external) UCSC browser, and are able to link out to the previous FlyAtlas resource to compare the data obtained by RNA-Seq with that obtained using microarrays.




Awaiting DOI assignment.

Publication for citation  FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data. Leader DP,Krause SA,Pandit A,Davies SA,Dow JAT; Nucleic Acids Res ; 2017; 10.1093/nar/gkx976;


Record added: Dec. 17, 2018, 1:06 p.m.
Record updated: Jan. 28, 2020, 7:47 p.m. by The FAIRsharing Team.

Show edit history


Support

General

Additional Information


Tools

    No tools defined


Access / Retrieve Data


Publications

FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data.

Leader DP,Krause SA,Pandit A,Davies SA,Dow JAT
Nucleic Acids Res 2017

View Paper (PubMed) View Publication

FlyAtlas: database of gene expression in the tissues of Drosophila melanogaster.

Robinson SW,Herzyk P,Dow JA,Leader DP
Nucleic Acids Res 2012

View Paper (PubMed) View Publication

Using FlyAtlas to identify better Drosophila melanogaster models of human disease.

Chintapalli VR,Wang J,Dow JA
Nat Genet 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Grant Number(s)

  • BB/K019953/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)