databases > bsg-d001333

ready A database for spatially resolved transcriptomes

Abbreviation:SpatialDB

General Information
Spatially resolved transcriptomics providing gene expression profiles with positional information is key to tissue function and fundamental to disease pathology. SpatialDB is the first public database that specifically curates spatially resolved transcriptomic data from published papers, aiming to provide a comprehensive and accurate resource of spatial gene expression profiles in tissues. Currently, SpatialDB contains detailed information of 24 datasets generated by 8 spatially resolved transcriptomic techniques. SpatialDB allows users to browse the spatial gene expression profile of all the 8 techniques online and compare the spatial gene expression profile of any two datasets generated by the same or different techniques side by side. It provides spatially variable (SV) genes identified by SpatialDE and trendsceek, as well as functional enrichment annotation of SV genes.




Awaiting DOI assignment.


This record is maintained by chenxw

Record added: Oct. 18, 2019, 9:06 a.m.
Record updated: Oct. 21, 2019, 9:56 a.m. by The FAIRsharing Team.

Show edit history


Support

General

Additional Information


Tools

    No tools defined




Publications

No publications available


Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is maintained by chenxw

Funds

Maintains

Grant Number(s)

  • 31701122 (National Natural Science Foundation of China (NSFC), Beijing, China)

  • 31801072 (National Natural Science Foundation of China (NSFC), Beijing, China)

  • 31871307 (National Natural Science Foundation of China (NSFC), Beijing, China)