databases > DOI:10.25504/FAIRsharing.0Hsbor
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ready A database for spatially resolved transcriptomes

Abbreviation:SpatialDB

General Information
Spatially resolved transcriptomics providing gene expression profiles with positional information is key to tissue function and fundamental to disease pathology. SpatialDB is the first public database that specifically curates spatially resolved transcriptomic data from published papers, aiming to provide a comprehensive and accurate resource of spatial gene expression profiles in tissues. Currently, SpatialDB contains detailed information of 24 datasets generated by 8 spatially resolved transcriptomic techniques. SpatialDB allows users to browse the spatial gene expression profile of all the 8 techniques online and compare the spatial gene expression profile of any two datasets generated by the same or different techniques side by side. It provides spatially variable (SV) genes identified by SpatialDE and trendsceek, as well as functional enrichment annotation of SV genes.




How to cite this record FAIRsharing.org: SpatialDB; A database for spatially resolved transcriptomes; DOI: https://doi.org/10.25504/FAIRsharing.0Hsbor; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Sep 27 2021 6:14 a.m.


This record is maintained by chenxw

Record added: Oct. 18, 2019, 9:06 a.m.
Record updated: Oct. 21, 2019, 9:56 a.m. by The FAIRsharing Team.

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  • This record is maintained by chenxw

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  • 31701122 (National Natural Science Foundation of China (NSFC), Beijing, China)

  • 31801072 (National Natural Science Foundation of China (NSFC), Beijing, China)

  • 31871307 (National Natural Science Foundation of China (NSFC), Beijing, China)