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ready Information Commons for Rice

Abbreviation:IC4R

General Information
Information Commons for Rice (IC4R) is a rice knowledgebase that incorporates rice data through multiple modules such as genome-wide expression profiles derived entirely from RNA-Seq data, resequencing-based genomic variations obtained from re-sequencing data of thousands of rice varieties, plant homologous genes covering multiple diverse plant species, post-translational modifications, rice-related literatures and gene annotations contributed by the rice research community.

Homepage http://ic4r.org

Countries that developed this resource China

Created in 2015

Taxonomic range

Subjects 





Awaiting DOI assignment.

Publication for citation  Information Commons for Rice (IC4R). Hao L,Zhang H,Zhang Z,Hu S,Xue Y; Nucleic Acids Res ; 2015; 10.1093/nar/gkv1141;


Record added: March 11, 2020, 2:30 p.m.
Record updated: March 18, 2020, 1:56 p.m. by The FAIRsharing Team.

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Support

General

FAQ IC4R FAQ
support email Jian Sang
online documentation Contact Information

Additional Information

Contact Lili Hao

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Download http://ic4r.org/download

Data Access

Browse Protein-Coding Genes http://ic4r.org/genes/browse
Browse lncRNAs http://ic4r.org/browse/lncRNA
Browse circular RNA http://ic4r.org/browse/circRNA
Search http://ic4r.org/search
BLAST http://ic4r.org/blast
HK-TS Gene Finder http://ic4r.org/hk-ts
Rice Literature Database http://literature.ic4r.org/article/index
Omics Module: Rice Variation Database http://variation.ic4r.org/
Omics Module: Rice Expression Database (RED) http://expression.ic4r.org/
RiceWiki http://wiki.ic4r.org/index.php/Main_Page

REST Web Services

IC4R API http://ic4r.org/api


Publications

Information Commons for Rice (IC4R).

Hao L,Zhang H,Zhang Z,Hu S,Xue Y
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Database Resources of the BIG Data Center in 2018.


Nucleic Acids Res 2017

View Paper (PubMed) View Publication

RiceWiki: a wiki-based database for community curation of rice genes.

Zhang Z,Sang J,Ma L,Wu G,Wu H,Huang D,Zou D,Liu S,Li A,Hao L,Tian M,Xu C,Wang X,Wu J,Xiao J,Dai L,Chen LL,Hu S,Yu J
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

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