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ready PGG.Han

General Information
PGG.Han is a population genome database serving as the central repository for the genomic data of the Han Chinese Genome Initiative (Phase I). In its current version, the PGG.Han archives whole-genome sequences or high-density genome-wide single-nucleotide variants (SNVs) of 114 783 Han Chinese individuals (a.k.a. the Han100K), representing geographical sub-populations covering 33 of the 34 administrative divisions of China, as well as Singapore. The PGG.Han provides: (i) an interactive interface for visualization of the fine-scale genetic structure of the Han Chinese population; (ii) genome-wide allele frequencies of hierarchical sub-populations; (iii) ancestry inference for individual samples and controlling population stratification based on nested ancestry informative markers (AIMs) panels; (iv) population-structure-aware shared control data for genotype-phenotype association studies (e.g. GWASs) and (v) a Han-Chinese-specific reference panel for genotype imputation.




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Publication for citation  PGG.Han: the Han Chinese genome database and analysis platform. Gao Y,Zhang C,Yuan L,Ling Y,Wang X,Liu C,Pan Y,Zhang X,Ma X,Wang Y,Lu Y,Yuan K,Ye W,Qian J,Chang H,Cao R,Yang X,Ma L,Ju Y,Dai L,Tang Y,Zhang G,Xu S; Nucleic Acids Res ; 2019; 10.1093/nar/gkz829;


Record added: March 17, 2020, 2:22 p.m.
Record updated: March 17, 2020, 2:22 p.m. by The FAIRsharing Team.




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PGG.Han: the Han Chinese genome database and analysis platform.

Gao Y,Zhang C,Yuan L,Ling Y,Wang X,Liu C,Pan Y,Zhang X,Ma X,Wang Y,Lu Y,Yuan K,Ye W,Qian J,Chang H,Cao R,Yang X,Ma L,Ju Y,Dai L,Tang Y,Zhang G,Xu S
Nucleic Acids Res 2019

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