databases > DOI:10.25504/FAIRsharing.wOcTaM

ready Genomic Observatories Meta-Database

Abbreviation:GEOME

General Information
The Genomic Observatories Meta-Database (GEOME) is a web-based database that captures the who, what, where, and when of biological samples and associated genetic sequences. GEOME helps users with the following goals: ensure the metadata from your biological samples is findable, accessible, interoperable, and reusable; improve the quality of your data and comply with global data standards; and integrate with R, ease publication to NCBI's sequence read archive, and work with an associated LIMS. The initial use case for GEOME came from the Diversity of the Indo-Pacific Network (DIPnet) resource.




How to cite this record FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jun 18 2021 3:29 p.m.

Publication for citation  The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples. Deck J,Gaither MR,Ewing R,Bird CE,Davies N,Meyer C,Riginos C,Toonen RJ,Crandall ED; PLoS Biol ; 2017; 10.1371/journal.pbio.2002925;


This record is maintained by eric_crandall

Record added: May 27, 2020, 12:07 p.m.
Record updated: Feb. 18, 2021, 4:33 p.m. by The FAIRsharing Team.

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Applies to: Data use

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REST Web Services



Publications

The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.

Deck J,Gaither MR,Ewing R,Bird CE,Davies N,Meyer C,Riginos C,Toonen RJ,Crandall ED
PLoS Biol 2017

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Credit

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Grant Number(s)

  • DBI-0956426; Biological Science Collections Tracker (National Science Foundation (NSF), USA)

  • DEB-1457848; DIPnet RCN (National Science Foundation (NSF), USA)

  • EF-0905606; NESCent catalysis and working group funding (National Science Foundation (NSF), USA)

  • GBMF1619 Moorea Biocode (The Gordon and Betty Moore Foundation, USA)

  • NMFS-PIRO-NA15NMF4270330 (National Oceanic and Atmospheric Administration (NOAA), MD, USA)