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ready CRISPRCasdb

General Information
CRISPRCasdb acts as a gateway to a publicly accessible database and software to enable the easy detection of CRISPR sequences in locally-produced data and the consultation of CRISPR sequence data present in the database. It also gives information on the presence of CRISPR-associated (cas) genes when they have been annotated as such.


This record replaces or incorporates the following deprecated resources:

Homepage https://crisprcas.i2bc.paris-saclay.fr/

Countries that developed this resource France

Created in 2017

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Awaiting DOI assignment.

Publication for citation  CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers. Pourcel C,Touchon M,Villeriot N,Vernadet JP,Couvin D,Toffano-Nioche C,Vergnaud G; Nucleic Acids Res ; 2019; 10.1093/nar/gkz915;


This record is maintained by cpourcel  ORCID

Record added: Sept. 10, 2020, 4:15 p.m.
Record updated: Sept. 10, 2020, 4:40 p.m. by The FAIRsharing Team.

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Publications

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.

Grissa I,Vergnaud G,Pourcel C
Nucleic Acids Res 2007

View Paper (PubMed) View Publication

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

Couvin D,Bernheim A,Toffano-Nioche C,Touchon M,Michalik J,Neron B,Rocha EPC,Vergnaud G,Gautheret D,Pourcel C
Nucleic Acids Res 2018

View Paper (PubMed) View Publication

MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems.

Abby SS,Neron B,Menager H,Touchon M,Rocha EP
PLoS One 2014

View Paper (PubMed) View Publication

CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers.

Pourcel C,Touchon M,Villeriot N,Vernadet JP,Couvin D,Toffano-Nioche C,Vergnaud G
Nucleic Acids Res 2019

View Paper (PubMed) View Publication

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

Couvin D,Bernheim A,Toffano-Nioche C,Touchon M,Michalik J,Neron B,Rocha EPC,Vergnaud G,Gautheret D,Pourcel C
Nucleic Acids Res 2018

View Paper (PubMed) View Publication

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