Edits to 'https://fairsharing.org/bsg-d001648' by 'acanak' at 09:27, 26 Oct 2020 (approved):
'publications' has been modified:
Before:
After:
ViruSurf: an integrated database to investigate viral sequences.|Canakoglu A,Pinoli P,Bernasconi A,Alfonsi T,Melidis DP,Ceri S|Nucleic Acids Res|2020
Added:
ViruSurf: an integrated database to investigate viral sequences.|Canakoglu A,Pinoli P,Bernasconi A,Alfonsi T,Melidis DP,Ceri S|Nucleic Acids Res|2020
Removed:
Edits to 'https://fairsharing.org/bsg-d001648' by 'The FAIRsharing Team' at 14:12, 01 Oct 2020 (approved):
'user_defined_tags' has been modified:
Before:
After:
COVID-19
Added:
COVID-19
Removed:
'supportLinks' has been modified:
Before:
After:
help|https://www.youtube.com/watch?v=ljo4WWZ1rU0&list=PLfWxoOMC6swIkqfLc3G4H-hW_pdmI1jFF
online documentation|https://github.com/DEIB-GECO/vue-metadata/wiki
Added:
help|https://www.youtube.com/watch?v=ljo4WWZ1rU0&list=PLfWxoOMC6swIkqfLc3G4H-hW_pdmI1jFF
online documentation|https://github.com/DEIB-GECO/vue-metadata/wiki
Removed:
'miriam_id' has been modified:
Before: None
After:
'onto_disciplines' has been modified:
Before:
Data Integration
Data Management
Data Quality
Data Visualization
After:
Data Integration
Data Management
Data Quality
Data Visualization
Life Science
Microbiology
Virology
Added:
Life Science
Microbiology
Virology
Removed:
'dataProcesses' has been modified:
Before:
After:
Curation principles, data curation, http://geco.deib.polimi.it/virusurf/repo_static/datacuration.html
Search & browse, data access, http://geco.deib.polimi.it/virusurf/
Search & Browse Sequences of the virus responsible for COVID-19, data access, http://geco.deib.polimi.it/virusurf_gisaid/
Added:
Curation principles, data curation, http://geco.deib.polimi.it/virusurf/repo_static/datacuration.html
Search & browse, data access, http://geco.deib.polimi.it/virusurf/
Search & Browse Sequences of the virus responsible for COVID-19, data access, http://geco.deib.polimi.it/virusurf_gisaid/
Removed:
Edits to 'https://fairsharing.org/bsg-d001648' by 'The FAIRsharing Team' at 11:03, 28 Sep 2020 (approved):
'doi' has been modified:
Before: None
After:
'miriam_id' has been modified:
Before:
After: None
'description' has been modified:
Before: ViruSurf is a large public database of viral sequences and integrated and curated metadata from heterogeneous sources (RefSeq, GenBank, COG-UK and NMDC); it also exposes computed nucleotide and amino acid variants, called from original sequences. A GISAID-specific ViruSurf database offers a subset of these functionalities. Given the current pandemic outbreak, SARS-CoV-2 data are collected from the four sources; but ViruSurf contains other virus species harmful to humans, including SARS-CoV, MERS-CoV, Ebola, and Dengue. The database is centered on sequences, described from their biological, technological, and organizational dimensions. In addition, the analytical dimension characterizes the sequence in terms of its annotations and variants. The web interface enables expressing complex search queries in a simple way; arbitrary search queries can freely combine conditions on attributes from the four dimensions, extracting the resulting sequences. Several example queries on the database confirm and possibly improve results from recent research papers; results can be recomputed over time and upon selected populations. Effective search over large and curated sequence data may enable faster responses to future threats that could arise from new viruses.
After: ViruSurf is a large public database of viral sequences and integrated and curated metadata from heterogeneous sources (RefSeq, GenBank, COG-UK and NMDC); it also exposes computed nucleotide and amino acid variants, called from original sequences. A GISAID-specific ViruSurf database offers a subset of these functionalities. Given the current pandemic outbreak, SARS-CoV-2 data are collected from the four sources; but ViruSurf contains other virus species harmful to humans, including SARS-CoV, MERS-CoV, Ebola, and Dengue. The database is centered on sequences, described from their biological, technological, and organizational dimensions. In addition, the analytical dimension characterizes the sequence in terms of its annotations and variants. The web interface enables expressing complex search queries in a simple way; arbitrary search queries can freely combine conditions on attributes from the four dimensions, extracting the resulting sequences. Several example queries on the database confirm and possibly improve results from recent research papers; results can be recomputed over time and upon selected populations. Effective search over large and curated sequence data may enable faster responses to future threats that could arise from new viruses.
Edits to 'https://fairsharing.org/bsg-d001648' by 'acanak' at 13:16, 18 Sep 2020 (approved):
'related_databases' has been modified:
Before:
GenBank
GISAID EpiCoV Database
After:
GenBank
Reference Sequence Database
GISAID EpiCoV Database
Added:
Reference Sequence Database
Removed:
Edits to 'https://fairsharing.org/bsg-d001648' by 'acanak' at 13:03, 18 Sep 2020 (approved):
'related_databases' has been modified:
Before:
After:
GenBank
GISAID EpiCoV Database
Added:
GenBank
GISAID EpiCoV Database
Removed:
'organizations' has been modified:
Before:
Politecnico di Milano|http://www.bioinformatics.deib.polimi.it/geco/|Maintains
After:
Politecnico di Milano|http://www.bioinformatics.deib.polimi.it/geco/|Maintains
The European Research Council (ERC)|https://erc.europa.eu/|Funds
European Institute of Innovation & Technology (EIT)|https://eit.europa.eu/|Funds
Added:
The European Research Council (ERC)|https://erc.europa.eu/|Funds
European Institute of Innovation & Technology (EIT)|https://eit.europa.eu/|Funds
Removed:
'grants' has been modified:
Before:
After:
20663
ERC Advanced Grant 693174
Added:
20663
ERC Advanced Grant 693174
Removed:
'onto_disciplines' has been modified:
Before:
After:
Data Integration
Data Management
Data Quality
Data Visualization
Added:
Data Integration
Data Management
Data Quality
Data Visualization
Removed:
'onto_domains' has been modified:
Before:
After:
data representational model
mutation
mutation analysis
variant
viral_sequence
Added:
data representational model
mutation
mutation analysis
variant
viral_sequence
Removed: