databases > DOI:10.25504/FAIRsharing.H3pwqc
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ready RNA Atlas of Structure Probing

Abbreviation:RASP

General Information
RASP (RNA Atlas of Structure Probing) is build from 161 deduplicated transcriptome-wide RNA secondary structures from datasets culled from 38 papers. RASP covers 18 species across animals, plants, bacteria, fungi, and also viruses, and categorizes 18 experimental methods including DMS-seq, SHAPE-Seq, SHAPE-MaP, and icSHAPE, etc. Specially, RASP curates the up-to-date datasets of several RNA secondary structure probing studies for the RNA genome of SARS-CoV-2, the RNA virus that caused the on-going COVID-19 pandemic. RASP also provides a user-friendly interface to query, browse, and visualize RNA structure profiles, offering a shortcut to accessing RNA secondary structures grounded in experimental data.

Homepage http://rasp.zhanglab.net

Countries that developed this resource China

Created in 2020

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How to cite this record FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Sep 18 2021 3:39 p.m.

Publication for citation  RASP: an atlas of transcriptome-wide RNA secondary structure probing data Pan Li, Xiaolin Zhou, Kui Xu and Qiangfeng Cliff Zhang; Nucleic Acids Research ; 2020.


This record is maintained by lipan

Record added: Oct. 19, 2020, 6:03 a.m.
Record updated: April 16, 2021, 7 p.m. by The FAIRsharing Team.

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Publications

RASP: an atlas of transcriptome-wide RNA secondary structure probing data

Pan Li, Xiaolin Zhou, Kui Xu and Qiangfeng Cliff Zhang
Nucleic Acids Research 2020

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  • This record is maintained by lipan

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Grant Number(s)

  • 2019YFA0110002 (Chinese Ministry of Science and Technology)

  • 31761163007 (National Natural Science Foundation of China)

  • 91740204 (National Natural Science Foundation of China)

  • 91940306 (National Natural Science Foundation of China)