databases > bsg-d001712

ready RNA Alatas of Structure Probing

Abbreviation:RASP

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We built a comprehensive RNA structure probing database called RASP (RNA Atlas of Structure Probing) by collecting 161 deduplicated transcriptome-wide RNA secondary structure probing datasets from 38 papers. RASP covers 18 species across animals, plants, bacteria, fungi, and also viruses, and categorizes 18 experimental methods including DMS-seq, SHAPE-Seq, SHAPE-MaP, and icSHAPE, etc. Specially, RASP curates the up-to-date datasets of several RNA secondary structure probing studies for the RNA genome of SARS-CoV-2, the RNA virus that caused the on-going COVID-19 pandemic. RASP also provides a user-friendly interface to query, browse, and visualize RNA structure profiles, offering a shortcut to accessing RNA secondary structures grounded in experimental data.

Homepage http://rasp.zhanglab.net

Countries that developed this resource China

Created in 2020

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Awaiting DOI assignment.

Publication for citation  RASP: an atlas of transcriptome-wide RNA secondary structure probing data Pan Li, Xiaolin Zhou, Kui Xu and Qiangfeng Cliff Zhang; Nucleic Acids Research ; 2020.


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Record added: Oct. 19, 2020, 6:03 a.m.
Record updated: Oct. 20, 2020, 1:51 p.m. by The FAIRsharing Team.

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RASP: an atlas of transcriptome-wide RNA secondary structure probing data

Pan Li, Xiaolin Zhou, Kui Xu and Qiangfeng Cliff Zhang
Nucleic Acids Research 2020

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