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EMBO Press Recommended Databases and Data Standards

Abbreviation: EMBO Recommended Databases and Data Standards

General Information

Homepage https://www.embopress.org/page/journal/14602075/authorguide#datadeposition

Countries that developed this resource European Union

Published in 2015

Type: Journal

Description:

The EMBO Press Recommended Databases and Data Standards is a document which describes the requirements for data deposition and formatting for papers submitted to an EMBO Press journal.

Collections/recommendations derived from this policy:

This policy implements the recommendation EMBO Press.

Taxonomic range

All

Subjects

User-defined Tags

Data sharing

Metadata standardization

How to cite this record FAIRsharing.org: EMBO Press Recommended Databases and Data Standards; DOI: https://doi.org/10.25504/FAIRsharing.9pk35x; Last edited: May 14, 2020, 10:34 a.m.; Last accessed: Jun 01 2020 5 p.m.

This record is maintained by EMBO_Press

Record added: April 4, 2016, 11:22 p.m. Record updated: May 14, 2020, 10:33 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.9pk35x' by 'The FAIRsharing Team' at 10:33, 14 May 2020 (approved):

	'description' has been modified:
		Before: This is the main checklist/guideline for data deposition and formatting for papers submitted to an EMBO Press journal. This pollcy is customised to each journal and is linked to from each journal's Information for Authors page. This policy record is linked to the Molecular Systems Biology journal, as an example.
		After: The EMBO Press Recommended Databases and Data Standards is a document which describes the requirements for data deposition and formatting for papers submitted to an EMBO Press journal.

Edits to 'https://fairsharing.org/FAIRsharing.9pk35x' by 'The FAIRsharing Team' at 10:31, 14 May 2020 (approved):

	'url' has been modified:
		Before: https://www.embopress.org/page/journal/17444292/authorguide#dataavailability
		After: https://www.embopress.org/page/journal/14602075/authorguide#datadeposition

	'supportLinks' has been modified:
		Before:
			twitter|@EMBOPress
		After:
			online documentation|https://www.embopress.org/page/journal/17444292/authorguide#dataavailability
			twitter|@EMBOPress
		Added:
			online documentation|https://www.embopress.org/page/journal/17444292/authorguide#dataavailability
		Removed:

	'std_implementation' has been modified:
		Before:
			Investigation Study Assay Tabular
			CellML
			mz Markup Language
			Minimal Information about a high throughput SEQuencing Experiment
			Minimum Information About a Proteomics Experiment
			Minimal Information Required In the Annotation of Models
			Minimum Information About a Microarray Experiment
			Minimum Information about a Molecular Interaction Experiment
			Systems Biology Markup Language
		After:
			Investigation Study Assay Tabular
			CellML
			mz Markup Language
			Molecular Interaction Tabular
			Core Information for Metabolomics Reporting
			Minimal Information about a high throughput SEQuencing Experiment
			Molecular Interaction eXtensible Markup Language
			Minimum Information About a Proteomics Experiment
			Minimal Information Required In the Annotation of Models
			Minimum Information About a Microarray Experiment
			Minimum Information about a Molecular Interaction Experiment
			Minimum Information about Flow Cytometry
			Systems Biology Markup Language
		Added:
			Molecular Interaction Tabular
			Core Information for Metabolomics Reporting
			Molecular Interaction eXtensible Markup Language
			Minimum Information about Flow Cytometry
		Removed:

	'homepage' has been modified:
		Before: https://www.embopress.org/page/journal/17444292/authorguide#dataavailability
		After: https://www.embopress.org/page/journal/14602075/authorguide#datadeposition

	'db_implementation' has been modified:
		Before:
			GenBank
			DNA Data Bank of Japan
			IntAct molecular interaction database
			MetaboLights
			ArrayExpress
			BioModels
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			MatrixDB: Extracellular Matrix Interaction Database
			PeptideAtlas
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Database of Genotypes and Phenotypes
			Nucleic Acids Database
			InnateDB
			UniProt Knowledgebase
			Database of Interacting Proteins
			Interologous Interaction Database
			Electron Microscopy Data Bank
			Worldwide Protein Data Bank
			JWS Online
			Host Pathogen Interaction Database
			FAIRsharing
		After:
			GenBank
			DNA Data Bank of Japan
			IntAct molecular interaction database
			Molecular INTeraction database
			MetaboLights
			FlowRepository
			figshare
			ArrayExpress
			BioModels
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			MatrixDB: Extracellular Matrix Interaction Database
			PeptideAtlas
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Database of Genotypes and Phenotypes
			Dryad
			Nucleic Acids Database
			InnateDB
			UniProt Knowledgebase
			Database of Interacting Proteins
			Interologous Interaction Database
			Electron Microscopy Data Bank
			Metabolomics Workbench
			Worldwide Protein Data Bank
			JWS Online
			Host Pathogen Interaction Database
			Image Data Resource
			Zenodo
			BioStudies
			FAIRsharing
		Added:
			Molecular INTeraction database
			FlowRepository
			figshare
			Dryad
			Metabolomics Workbench
			Image Data Resource
			Zenodo
			BioStudies
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.9pk35x' by 'The FAIRsharing Team' at 16:12, 24 Mar 2020 (approved):

	'url' has been modified:
		Before: http://msb.embopress.org/authorguide#datadeposition
		After: https://www.embopress.org/page/journal/17444292/authorguide#dataavailability

	'homepage' has been modified:
		Before: http://msb.embopress.org/authorguide#datadeposition
		After: https://www.embopress.org/page/journal/17444292/authorguide#dataavailability

	'name' has been modified:
		Before: European Molecular Biology Organisation Press Recommended Databases and Data Standards
		After: EMBO Press Recommended Databases and Data Standards

Edits to 'https://fairsharing.org/FAIRsharing.9pk35x' by 'The FAIRsharing Team' at 10:38, 06 Feb 2018 (approved):

	'db_implementation' has been modified:
		Before:
			biodbcore-000001|GenBank
			biodbcore-000027|The DNA Data Bank of Japan
			biodbcore-000054|IntAct molecular interaction database
			biodbcore-000168|MetaboLights
			biodbcore-000305|ArrayExpress
			biodbcore-000306|A repository of mathematical models of biological and biomedical systems
			biodbcore-000310|European Nucleotide Archive
			biodbcore-000325|PRoteomics IDEntifications database
			biodbcore-000328|The European Genome-phenome Archive
			biodbcore-000358|MatrixDB: Extracellular Matrix interactions database
			biodbcore-000392|PeptideAtlas
			biodbcore-000438|Database of Single Nucleotide Polymorphism
			biodbcore-000441|Gene Expression Omnibus
			biodbcore-000462|Database of Genotypes and Phenotypes
			biodbcore-000513|Nucleic Acids Database
			biodbcore-000520|InnateDB
			biodbcore-000544|UniProt Knowledgebase
			biodbcore-000558|Database of Interacting Proteins
			biodbcore-000583|Interologous Interaction Database
			biodbcore-000596|Electron Microscopy Data Bank
			biodbcore-000681|Worldwide Protein Data Bank
			biodbcore-000740|JWS Online
			biodbcore-000741|Host Pathogen Interaction Database
		After:
			biodbcore-000001|GenBank
			biodbcore-000027|The DNA Data Bank of Japan
			biodbcore-000054|IntAct molecular interaction database
			biodbcore-000168|MetaboLights
			biodbcore-000305|ArrayExpress
			biodbcore-000306|A repository of mathematical models of biological and biomedical systems
			biodbcore-000310|European Nucleotide Archive
			biodbcore-000325|PRoteomics IDEntifications database
			biodbcore-000328|The European Genome-phenome Archive
			biodbcore-000358|MatrixDB: Extracellular Matrix interactions database
			biodbcore-000392|PeptideAtlas
			biodbcore-000438|Database of Single Nucleotide Polymorphism
			biodbcore-000441|Gene Expression Omnibus
			biodbcore-000462|Database of Genotypes and Phenotypes
			biodbcore-000513|Nucleic Acids Database
			biodbcore-000520|InnateDB
			biodbcore-000544|UniProt Knowledgebase
			biodbcore-000558|Database of Interacting Proteins
			biodbcore-000583|Interologous Interaction Database
			biodbcore-000596|Electron Microscopy Data Bank
			biodbcore-000681|Worldwide Protein Data Bank
			biodbcore-000740|JWS Online
			biodbcore-000741|Host Pathogen Interaction Database
			biodbcore-001004|FAIRsharing
		Added:
			biodbcore-001004|FAIRsharing
		Removed:

Organisations

Record Maintainer

This record is maintained by EMBO_Press

Maintains

European Molecular Biology Organisation (EMBO) (Consortium)

Policy External Cross References

TOP Level Data Transparency: 2: Requires data transparency

TOP qualifying comments: The journal will only review and publish manuscripts if the authors agree to make all data that cannot be published in the journal itself (e.g. novel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available, where possible in an appropriate public database.

Standards and Databases mentioned in this policy

Databases

Standards

Usage / Access

Conditions of Use

Support

General

online documentation	Data Availability Guideline
twitter	@EMBOPress

Additional Information

Contact

Thomas Lemberger

EMBO Press Recommended Databases and Data Standards

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