standards > terminology artifact > DOI:10.25504/FAIRsharing.j9y503
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ready Cell Ontology

Abbreviation: CL


General Information
The Cell Ontology (CL) is a candidate OBO Foundry ontology for the representation of cell types. First described in 2005, the CL integrates cell types from the prokaryotic, fungal, and eukaryotic organisms. As a core component of the OBO Foundry, the CL merges information contained in species-specific anatomical ontologies as well as referencing other OBO Foundry ontologies such as the Protein Ontology (PR) for uniquely expressed biomarkers and the Gene Ontology (GO) for the biological processes a cell type participates in. The CL is under continuous revision to expand representation of cell types and to better integrate with other biomedical ontologies.


This record replaces or incorporates the following deprecated resources:

Homepage https://github.com/obophenotype/cell-ontology

Countries that developed this resource European Union , United Kingdom , United States

Created in 2008

Taxonomic range




How to cite this record FAIRsharing.org: CL; Cell Ontology; DOI: https://doi.org/10.25504/FAIRsharing.j9y503; Last edited: Jan. 29, 2020, 7:42 p.m.; Last accessed: Oct 28 2021 12:29 a.m.

Publication for citation  The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. Diehl AD,Meehan TF,Bradford YM,Brush MH,Dahdul WM,Dougall DS,He Y,Osumi-Sutherland D,Ruttenberg A,Sarntivijai S,Van Slyke CE,Vasilevsky NA,Haendel MA,Blake JA,Mungall CJ; J Biomed Semantics ; 2016; 10.1186/s13326-016-0088-7;


This record is maintained by Alexander_Diehl  ORCID

Record updated: Jan. 29, 2020, 7:41 p.m. by The FAIRsharing Team.

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Applies to: Data use

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Publications

Logical development of the cell ontology.

Meehan TF,Masci AM,Abdulla A,Cowell LG,Blake JA,Mungall CJ,Diehl AD
BMC Bioinformatics 2011

View Paper (PubMed) View Publication

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

Diehl AD,Meehan TF,Bradford YM,Brush MH,Dahdul WM,Dougall DS,He Y,Osumi-Sutherland D,Ruttenberg A,Sarntivijai S,Van Slyke CE,Vasilevsky NA,Haendel MA,Blake JA,Mungall CJ
J Biomed Semantics 2016

View Paper (PubMed) View Publication

CL Ontology Display

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Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.




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  • DE-AC02-05CH11231 (U.S. Department of Energy)