Standards > terminology artifact > DOI:10.25504/FAIRsharing.j9y503


ready Cell Ontology

Abbreviation:CL


General Information
The Cell Ontology (CL) is a candidate OBO Foundry ontology for the representation of cell types. First described in 2005, the CL integrates cell types from the prokaryotic, fungal, and eukaryotic organisms. As a core component of the OBO Foundry, the CL merges information contained in species-specific anatomical ontologies as well as referencing other OBO Foundry ontologies such as the Protein Ontology (PR) for uniquely expressed biomarkers and the Gene Ontology (GO) for the biological processes a cell type participates in. The CL is under continuous revision to expand representation of cell types and to better integrate with other biomedical ontologies.


This record replaces or incorporates the following deprecated resources:

Homepage https://github.com/obophenotype/cell-ontology

Developed in European Union , United Kingdom , United States

Created in 2008

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How to cite this record FAIRsharing.org: CL; Cell Ontology; DOI: https://doi.org/10.25504/FAIRsharing.j9y503; Last edited: Feb. 22, 2018, 1:57 p.m.; Last accessed: Aug 19 2018 4:12 p.m.


This record is maintained by Alexander_Diehl

Record updated: Jan. 22, 2018, 8:04 p.m. by Alexander_Diehl.

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Publications

Logical development of the cell ontology.

Meehan TF,Masci AM,Abdulla A,Cowell LG,Blake JA,Mungall CJ,Diehl AD
BMC Bioinformatics 2011

View Paper (PubMed) View Publication

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

Diehl AD,Meehan TF,Bradford YM,Brush MH,Dahdul WM,Dougall DS,He Y,Osumi-Sutherland D,Ruttenberg A,Sarntivijai S,Van Slyke CE,Vasilevsky NA,Haendel MA,Blake JA,Mungall CJ
J Biomed Semantics 2016

View Paper (PubMed) View Publication

CL Ontology Display

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Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.




Implementing Databases (5)
ModelDB
ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. ModelDB is tightly coupled with NeuronDB. Models can be coded in any language for any environment. Model code can be viewed before downloading and browsers can be set to auto-launch the models.

Stem Cell Discovery Engine
Comparison system for cancer stem cell analysis

CellFinder
CellFinder maps validated gene and protein expression, phenotype and images related to cell types.The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development. CellFinder provides long-term data storage for validated and curated primary research data and provides additional expert-validation through relevant information extracted from text.

Rat Genome Database
The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innovative software tools make it a valuable resource for researchers worldwide.

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

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