standards > terminology artifact > DOI:10.25504/FAIRsharing.8a7a0w


ready verteberate Homologous Organ Groups

Abbreviation: vHOG


General Information
vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. A mapping to species-specific anatomical ontologies is also provided. This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and we provide confidence codes and references when available.



How to cite this record FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Aug 19 2019 3:13 a.m.


This record is maintained by marcrr  ORCID

Record updated: May 6, 2019, 2:47 p.m. by The FAIRsharing Team.

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Publications

vHOG, a multispecies vertebrate ontology of homologous organs groups.

Niknejad A,Comte A,Parmentier G,Roux J,Bastian FB,Robinson-Rechavi M
Bioinformatics 2012

View Paper (PubMed) View Publication

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Haendel MA,Balhoff JP,Bastian FB,Blackburn DC,Blake JA,Bradford Y,Comte A,Dahdul WM,Dececchi TA,Druzinsky RE,Hayamizu TF,Ibrahim N,Lewis SE,Mabee PM,Niknejad A,Robinson-Rechavi M,Sereno PC,Mungall CJ
J Biomed Semantics 2014

View Paper (PubMed) View Publication

vHOG Ontology Display

View in OBO Foundry.



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Implementing Databases (2)
Bgee DataBase for Gene Expression Evolution
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

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