standards > terminology artifact > DOI:10.25504/FAIRsharing.pdwqcr


ready Mouse Adult Gross Anatomy Ontology

Abbreviation: MA


General Information
The Mouse Adult Gross Anatomy ontology also has aliases of 'Mouse Anatomy' or 'Mouse anatomical entity'. The resource is a standard, providing a structured vocabulary for the adult anatomy of the mouse. This ontology is part of the Gene Expression Database (GDX) Project of the Jackson Laboratory.

Homepage http://www.informatics.jax.org/searches/AMA_form.shtml

Countries that developed this resource United States

Created in 2012

Taxonomic range

Knowledge Domains 




How to cite this record FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Dec 06 2019 11:14 p.m.


Record updated: July 2, 2019, 11:31 a.m. by The FAIRsharing Team.

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Data Release

Data Access




Publications

The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data.

Hayamizu TF,Mangan M,Corradi JP,Kadin JA,Ringwald M
Genome Biol 2005

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MA Ontology Display

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Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

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Metrics

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Implementing Databases (9)
Mouse Phenome Database
Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public sources. MPD has three major types of strain-centric data sets: phenotype strain surveys, SNP and variation data, and gene expression strain surveys.

Bgee DataBase for Gene Expression Evolution
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.

Rat Genome Database
The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innovative software tools make it a valuable resource for researchers worldwide.

Kidney and Urinary Pathway Knowledgebase
The KUPKB is a collection of omics datasets that have been extracted from scientific publications and other related renal databases. The iKUP browser provides a single point of entry for you to query and browse these datasets.

MGI Mouse Gene Expression Database
The Gene Expression Database (GXD) is a community resource for gene expression information from the laboratory mouse. GXD stores and integrates different types of expression data and makes these data freely available in formats appropriate for comprehensive analysis. There is particular emphasis on endogenous gene expression during mouse development.

GeneWeaver
The GeneWeaver data and analytics website is a publically available resource for storing, curating and analyzing sets of genes from heterogeneous data sources. The system enables discovery of relationships among genes, variants, traits, drugs, environments, anatomical structures and diseases implicitly found through gene set intersections. By enumerating the common and distinct biological molecules associated with all subsets of curated or user submitted groups of gene sets and gene networks, GeneWeaver empowers users with the ability to construct data driven descriptions of shared and unique biological processes, diseases and traits within and across species.

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

BovineMine
BovineMine integrates the bovine reference genome assembly with many other biological data sets, including genomes of other species. The sheep and goat genomes allow comparison across ruminants. Model organism data (human, mouse, rat) allow well-curated data sets to be applied to ruminants using orthology.

Mouse Tumor Database
The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of human cancers by providing access to information on and data for: spontaneous and induced tumors in mice, genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, genetic factors associated with tumor susceptibility in mice, somatic genetic-mutations observed in tumors, and Patient Derived Xenograft (PDX) models.

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Grant Number(s)

  • HD33745 (National Institutes of Health (NIH), Bethesda, MD, USA)