Zebrafish anatomy and development
Countries that developed this resource United States
Created in 1999
How to cite this record FAIRsharing.org: ZFA; Zebrafish anatomy and development; DOI: https://doi.org/10.25504/FAIRsharing.s3r6sk; Last edited: Dec. 11, 2019, 4:16 p.m.; Last accessed: Oct 21 2020 7:49 p.m.
Record updated: Dec. 3, 2019, 3:11 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.s3r6sk' by 'The FAIRsharing Team' at 15:11, 03 Dec 2019 (approved): 'onto_disciplines' has been modified: Before: Anatomy Life Science After: Anatomy Developmental Biology Life Science Ontology and Terminology Added: Developmental Biology Ontology and Terminology Removed: 'related_standards' has been modified: Before: Teleost Anatomy Ontology After: Teleost Anatomy Ontology Fish Ontology Added: Fish Ontology Removed: 'miriam_id' has been modified: Before: None After:
Edits to 'https://fairsharing.org/FAIRsharing.s3r6sk' by 'The FAIRsharing Team' at 19:22, 23 Jul 2017 (approved): 'homepage' has been modified: Before: http://purl.bioontology.org/ontology/ZFA After: https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources
Edits to 'https://fairsharing.org/FAIRsharing.s3r6sk' by 'The FAIRsharing Team' at 12:35, 21 Nov 2016 (approved): 'description' has been modified: Before: "Zebrafish anatomy and development" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/ZFA. This text was generated automatically. If you work on the project responsible for "Zebrafish anatomy and development" then please consider helping us by claiming this record and updating it appropriately. After: A structured controlled vocabulary of the anatomy and development of the Zebrafish. If you work on the project responsible for "Zebrafish anatomy and development" then please consider helping us by claiming this record and updating it appropriately.
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Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides services for any size of GBT mutagenesis projects on zebrafish to encourage collaboration in the research community.
Bgee DataBase for Gene Expression Evolution
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.
The Zebrafish Information Network
The Zebrafish Information Network, ZFIN, serves as the primary community database resource for the laboratory use of zebrafish. We develop and support integrated zebrafish genetic, genomic, developmental and physiological information and link this information extensively to corresponding data in other model organism and human databases.
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
Domain-centric GO provides associations between ontological terms and protein domains at the superfamily and family levels. Some functional units consist of more than one domain acting together or acting at an interface between domains; therefore, ontological terms associated with pairs of domains, triplets and longer supra-domains are also provided.
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National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
U.S. National Library of Medicine (Government body)
National Science Foundation (NSF), USA (Government body)
ZFIN administrators (Consortium)
BDI-0641025 (National Science Foundation (NSF), USA)
HG002659 (U.S. National Library of Medicine)
HG004838 (U.S. National Library of Medicine)