FAIRsharing is here! From our first incarnation, BioSharing.org, which focussed on the life sciences, we are growing into FAIRsharing.org, to serve users across all disciplines and support Findable, Accessible, Interoperable and Reusable (FAIR) data.
Standards > model/format > bsg-s000054


ready Gating-ML


General Information
The Gating-ML specification represents a proposal on how to form unambiguous XML-based gate definitions that may be used independently as well as included as one of the components of ACS. The specification supports rectangular gates in n dimensions (i.e., from one-dimensional range gates up to n-dimensional hyper-rectangular regions), polygon gates in two (and more) dimensions, ellipsoid gates in n dimensions, decision tree structures, and Boolean collections of any of the types of gates. Gates can be uniquely identified and may be ordered into a hierarchical structure to describe a gating strategy. Gates may be applied on parameters as in list mode data files (e.g., FCS files) or on transformed parameters as described by any explicit parameter transformation.



Record updated: May 31, 2017, 2:25 p.m. by The FAIRsharing Team.


Support

Tools

    No tools defined


Schemas
Download
Download

Access / Retrieve Data

Conditions of Use





Connectivity
Related Standards

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined


Implementing Databases (1)
FlowRepository
FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. Data are generally associated with peer reviewed manuscripts.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Grant Number(s)

  • 1R01EB008400 (National Institute of Biomedical Imaging and Bioengineering)

  • EB005034 (National Institute of Biomedical Imaging and Bioengineering)

  • R01 EB008400 (National Institutes of Health)


Publications

Flow cytometry data standards.

Spidlen J,Shooshtari P,Kollmann TR,Brinkman RR
BMC Res Notes 2011

View Paper (PubMed) View Paper (DOI)

ISAC's Gating-ML 2.0 data exchange standard for gating description.

Spidlen J,Moore W,Brinkman RR
Cytometry A 2015

View Paper (PubMed) View Paper (DOI)

Gating-ML: XML-based gating descriptions in flow cytometry.

Spidlen J,Leif RC,Moore W,Roederer M,Brinkman RR
Cytometry A 2008

View Paper (PubMed) View Paper (DOI)