HUPO PSI Mass Spectrometry Controlled Vocabulary
How to cite this record FAIRsharing.org: PSI-MS CV; HUPO PSI Mass Spectrometry Controlled Vocabulary; DOI: 10.25504/FAIRsharing.sxh2dp; Last edited: Feb. 22, 2018, 2:40 p.m.; Last accessed: May 21 2018 3:57 a.m.
Record updated: May 4, 2017, 2:11 p.m. by The FAIRsharing Team.
|online documentation||http://www.psidev.info/groups/controlled ...|
|online documentation||https://github.com/HUPO-PSI/psi-ms-CV/bl ...|
No XSD schemas defined
Conditions of Use
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.
Mayer G,Montecchi-Palazzi L,Ovelleiro D,Jones AR,Binz PA,Deutsch EW,Chambers M,Kallhardt M,Levander F,Shofstahl J,Orchard S,Vizcaino JA,Hermjakob H,Stephan C,Meyer HE,Eisenacher M
Database (Oxford) 2013
No guidelines defined
No semantic standards defined
Models and Formats
No identifier schema standards defined
MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. We offer user-submission tools and have strong reporting capabilities. We will utilise and further develop de-facto standard formats where various components are encapsulated, such as the encoded spectral and chromatographic data, and associated information about the chemical structure, as well as metadata describing assays and the study as a whole. We are dedicated to collaborate closely with major parties in world-wide metabolomics communities, such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).
Golm Metabolome Database
The Golm Metabolome Database (GMD) provides gas chromatography (GC) mass spectrometry (MS) reference spectra, reference metabolite profiles and tools for one of the most widespread routine technologies applied to the large scale screening and discovery of novel metabolic biomarkers.
Japan Proteome Standard Repository
jPOSTrepo (Japan ProteOme STandard Repository) is a data repository of sharing MS raw/processed data.
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
This record is not implemented by any policy.
BB/H024654/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/I000909/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
EU FP7 grant number 260558 (ProteomeXchange)
P50 GM076547 (NIGMS NIH)
R01 GM087221 (NIGMS NIH)
WT085949MA (Wellcome Trust, UK)