standards > terminology artifact > DOI:10.25504/FAIRsharing.284e1z


ready Ontology for Biomedical Investigations

Abbreviation: OBI


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General Information
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted. OBI fosters clear communication about scientific investigations by defining more than 2500 terms for assays, devices, objectives, and more.


This record replaces or incorporates the following deprecated resources:

Homepage http://obi-ontology.org/

Countries that developed this resource European Union , United Kingdom , United States

Created in 2008

Taxonomic range



In the following recommendations:



How to cite this record FAIRsharing.org: OBI; Ontology for Biomedical Investigations; DOI: https://doi.org/10.25504/FAIRsharing.284e1z; Last edited: Feb. 8, 2021, 1:22 p.m.; Last accessed: Apr 17 2021 1 p.m.

Publication for citation  The Ontology for Biomedical Investigations. Bandrowski A, Brinkman R, Brochhausen M et al; PLoS One ; 2016; 10.1371/journal.pone.0154556;


This record is maintained by bpeters  ORCID

Record updated: Feb. 8, 2021, 1:06 p.m. by The FAIRsharing Team.

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In Collections
Cell Migration Standardisation Organisation
bioCADDIE
eTRIKS Standards Starter Pack
ISO/CD 20691 Collection - DRAFT
RDA Covid-19 WG Resources


Support

General

forum GitHub Issue Tracker
Mailing List OBI Users Mailing List
Mailing List OBI Development Mailing List
online documentation OBI Development Call Agenda
online documentation OBI Term Guidelines
online documentation OBI Wiki
online documentation GitHub Repository

Additional Information

Contact Bjoern Peters   ORCID

External Links

Bioportal http://bioportal.bioontology.org/ontologies/OBI
OBO http://obofoundry.org/ontology/obi.html

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

download http://purl.obolibrary.org/obo/obi.owl

Data Access

Browse (Ontobee) http://www.ontobee.org/ontology/OBI
Browse (OLS) https://www.ebi.ac.uk/ols/ontologies/obi



Publications

Query enhancement through the practical application of ontology: the IEDB and OBI.

Vita R,Overton JA,Greenbaum JA,Sette A,Peters B
J Biomed Semantics 2013

View Paper (PubMed) View Publication

Modeling biomedical experimental processes with OBI.

Brinkman RR,Courtot M,Derom D,Fostel JM,He Y,Lord P,Malone J,Parkinson H,Peters B,Rocca-Serra P,Ruttenberg A,Sansone SA,Soldatova LN,Stoeckert CJ Jr,Turner JA,Zheng J
J Biomed Semantics 2010

View Paper (PubMed) View Publication

Minimum Information about a Genotyping Experiment (MIGEN).

Huang J,Mirel D,Pugh E,Xing C,Robinson PN,Pertsemlidis A,Ding L,Kozlitina J,Maher J,Rios J,Story M,Marthandan N,Scheuermann RH
Stand Genomic Sci 2011

View Paper (PubMed) View Publication

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.

Rocca-Serra P,Walls R,Parnell J,Gallery R,Zheng J,Sansone SA,Gonzalez-Beltran A
Database (Oxford) 2015

View Paper (PubMed) View Publication

The Ontology for Biomedical Investigations.

Bandrowski A, Brinkman R, Brochhausen M et al
PLoS One 2016

View Paper (PubMed) View Publication

OBI Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.



Related Standards

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


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Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 1458400 (National Science Foundation (NSF), USA)

  • 1U19AI118626 (National Institutes of Health (NIH), Bethesda, MD, USA)

  • 503630 (European Network of Excellence (ENFIN), Hinxton, Cambridgeshire, UK)

  • BB/C008200/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/E025080/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/E025080/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/G000638/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/G000638/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/I000917/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/L024101/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • EP/K030582/1 (Engineering and Physical Sciences Research Council (EPSRC), UK)

  • EP/M015661/1 (Engineering and Physical Sciences Research Council (EPSRC), UK)

  • GC1R-06673-B (California Institute for Regenerative Medicine)

  • H2020-EU.1.4.1.3 654241 (European Commission)

  • H2020-EU.3.1 634107 (European Commission)

  • HHSN272201200010C (National Institutes of Health (NIH), Bethesda, MD, USA)

  • HHSN272201400028C (National Institutes of Health (NIH), Bethesda, MD, USA)

  • HHSN272201400030C (National Institutes of Health (NIH), Bethesda, MD, USA)

  • P41 HG003619 (National Institutes of Health (NIH), Bethesda, MD, USA)

  • R01AI081062 (National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA)

  • R01GM093132 (National Institutes of Health (NIH), Bethesda, MD, USA)

  • U01 DK 072473 (National Institutes of Health (NIH), Bethesda, MD, USA)