FuGEFlow

General Information

FuGEFlow represents a collaborative effort to develop of flow cytometry experimental workflow description based on the FuGE model. The Functional Genomics Experiment data model (FuGE) describes common aspects of comprehensive, high-throughput experiments. FuGE is an extendable model that provides a basis for creation of new technology-specific data formats, such as FuGEFlow for flow cytometry.

Homepage http://flowcyt.sourceforge.net/fugeflow/

Countries that developed this resource Canada

Created in 2007

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: FuGEFlow; FuGEFlow; DOI: https://doi.org/10.25504/FAIRsharing.8xecy7; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Apr 04 2020 4:56 p.m.

Record updated: Sept. 19, 2016, 12:31 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.8xecy7' by 'The FAIRsharing Team' at 12:31, 19 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			Josef Spindlen
		After:
			Ryan R Brinkman
		Added:
		Removed:

Support

General

forum	https://sourceforge.net/p/flowcyt/discus ...
Mailing List	None

Additional Information

Contact

Ryan R Brinkman

Tools

No tools defined

Schemas

Name: FlowCyt-fuge-schemas26Sep10
Version: 3.1

Download

	study.xsd
	dicom.xsd
	fluidics.xsd
	waveform.xsd
	solution.xsd
	files.xsd
	dicom.native_model.xsd
	detectors.cameras.xsd
	pulses.xsd
	sorter_electrostatic.xsd
	instance.xsd
	header.xsd
	modality.xsd
	multiplex_groups.xsd
	channels.xsd
	quality.xsd
	filters.xsd
	optics.xsd
	num_types.xsd
	slide.xsd
	layer.xsd
	detectors.xsd
	ucum.xsd
	signature.xsd
	overview.xsd
	instrument.xsd
	container.xsd
	image.display.xsd
	person_name.xsd
	item.xsd
	patients.xsd
	Gating-ML.v1.5.xsd
	chem.xsd
	TOC.v1.0.xsd
	measurements.xsd
	Transformations.v1.5.xsd
	flow_cell.xsd
	image.context.xsd
	files.containers.xsd
	mime.xsd
	image.xsd
	organs.xsd
	specimen.xsd
	pixel_matrix.xsd
	series.xsd
	units.xsd
	dicom.dataset.xsd
	data.xsd
	optical_path.xsd
	file_locations.xsd
	pixel.xsd
	stage.xsd
	time.xsd
	trans_media.xsd
	acquisition.xsd
	list_mode.xsd
	analyte_reporters.xsd
	address.xsd
	persons.xsd
	files.other.xsd
	fcs_3_1.xsd
	units.volume.xsd
	DataTypes.v1.5.xsd
	instrument.flow.xsd
	num_data.xsd
	instrument.microscope.xsd
	image.formats.xsd
	toc_RCL.xsd
	strings.xsd
	about.xsd
	units.length.xsd
	exper_overview.xsd
	light.xsd
	arrays.xsd
	sorter.xsd
	excitation.xsd
	miflocyt.xsd

Name: FlowCyt-fuge-schemas26Sep10
Version: 3.0

Download

	chem.xsd
	strings.xsd
	image.formats.xsd
	light.xsd
	instrument.flow.xsd
	flow_cell.xsd
	study.xsd
	time.xsd
	num_types.xsd
	stage.xsd
	dicom.xsd
	layer.xsd
	instrument.microscope.xsd
	modality.xsd
	address.xsd
	excitation.xsd
	dicom.native_model.xsd
	list_mode.xsd
	Gating-ML.v1.5.xsd
	quality.xsd
	units.length.xsd
	about.xsd
	person_name.xsd
	header.xsd
	units.xsd
	series.xsd
	persons.xsd
	pulses.xsd
	DataTypes.v1.5.xsd
	files.other.xsd
	miflocyt.xsd
	data.xsd
	specimen.xsd
	files.containers.xsd
	detectors.xsd
	TOC.v1.0.xsd
	fcs_3_0.xsd
	num_data.xsd
	multiplex_groups.xsd
	fluidics.xsd
	container.xsd
	dicom.dataset.xsd
	slide.xsd
	channels.xsd
	patients.xsd
	optics.xsd
	sorter.xsd
	signature.xsd
	image.context.xsd
	detectors.cameras.xsd
	solution.xsd
	trans_media.xsd
	analyte_reporters.xsd
	files.xsd
	units.volume.xsd
	measurements.xsd
	filters.xsd
	instrument.xsd
	exper_overview.xsd
	toc_RCL.xsd
	arrays.xsd
	ucum.xsd
	mime.xsd
	image.xsd
	organs.xsd
	overview.xsd
	file_locations.xsd
	instance.xsd
	sorter_electrostatic.xsd
	optical_path.xsd
	pixel_matrix.xsd
	pixel.xsd
	Transformations.v1.5.xsd
	item.xsd
	acquisition.xsd
	image.display.xsd
	waveform.xsd

Access / Retrieve Data

Conditions of Use

Data Access

download

https://sourceforge.net/projects/flowcyt/files/

Publications

FuGEFlow: data model and markup language for flow cytometry.

Qian Y,Tchuvatkina O,Spidlen J,Wilkinson P,Gasparetto M,Jones AR,Manion FJ,Scheuermann RH,Sekaly RP,Brinkman RR
BMC Bioinformatics 2009

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Ontology for Biomedical Investigations

Models and Formats

Mathematics Markup Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (1)

FlowRepository
FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. Data are generally associated with peer reviewed manuscripts.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

ELIXIR Italy (Government body)
National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA (Government body)

Maintains

The Flow Informatics and Computational Cytometry Society (FICCS)

Grant Number(s)

AI40076 (National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA)
EB005034 (ELIXIR Italy)

FuGEFlow

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