standards > model/format > DOI:10.25504/FAIRsharing.3gxr9b


ready Simple Omnibus Format in Text

Abbreviation: SOFT


General Information
Using Simple Omnibus Format in Text (SOFT), researchers can readily upload and download data. The resource is text-based so can be compatible with simple spreadsheets and data applications. A SOFT file can simultaneously contain both tabulated data as well as descriptive information for a chain of related Platforms, Samples, and/or Series records.



How to cite this record FAIRsharing.org: SOFT; Simple Omnibus Format in Text; DOI: https://doi.org/10.25504/FAIRsharing.3gxr9b; Last edited: Nov. 23, 2018, 11:27 a.m.; Last accessed: Dec 19 2018 6:11 a.m.


Record updated: Sept. 23, 2016, 2:30 p.m. by The FAIRsharing Team.

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Tools

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Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

NCBI GEO: mining tens of millions of expression profiles--database and tools update.

Barrett T,Troup DB,Wilhite SE,Ledoux P,Rudnev D,Evangelista C,Kim IF,Soboleva A,Tomashevsky M,Edgar R
Nucleic Acids Res 2006

View Paper (PubMed) View Publication

NCBI GEO: mining millions of expression profiles--database and tools.

Barrett T,Suzek TO,Troup DB,Wilhite SE,Ngau WC,Ledoux P,Rudnev D,Lash AE,Fujibuchi W,Edgar R
Nucleic Acids Res 2004

View Paper (PubMed) View Publication

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.

Edgar R,Domrachev M,Lash AE
Nucleic Acids Res 2001

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined


Implementing Databases (3)
Rat Genome Database
The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innovative software tools make it a valuable resource for researchers worldwide.

Gene Expression Omnibus
The Gene Expression Omnibus (GEO) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the studies and gene expression patterns stored in GEO.

A CLAssification of Mobile genetic Elements
ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.

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