Simple Omnibus Format in Text
How to cite this record FAIRsharing.org: SOFT; Simple Omnibus Format in Text; DOI: https://doi.org/10.25504/FAIRsharing.3gxr9b; Last edited: Sept. 4, 2019, 9:23 p.m.; Last accessed: May 11 2021 12:25 p.m.
Record updated: Sept. 4, 2019, 11:56 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.3gxr9b' by 'The FAIRsharing Team' at 11:56, 04 Sep 2019 (approved): 'related_standards' has been modified: Before: After: Minimum Information About a Microarray Experiment Added: Minimum Information About a Microarray Experiment Removed: 'miriam_id' has been modified: Before: None After:
Edits to 'https://fairsharing.org/FAIRsharing.3gxr9b' by 'The FAIRsharing Team' at 20:39, 08 Sep 2016 (approved): 'description' has been modified: Before: Simple Omnibus Format in Text (SOFT) is designed for rapid batch submission (and download) of data. SOFT is a simple line-based, plain text format, meaning that SOFT files may be readily generated from common spreadsheet and database applications. A single SOFT file can hold both data tables and accompanying descriptive information for multiple, concatenated Platforms, Samples, and/or Series records. After: Using Simple Omnibus Format in Text (SOFT), researchers can readily upload and download data. The resource is text-based so can be compatible with simple spreadsheets and data applications. A SOFT file can simultaneously contain both tabulated data as well as descriptive information for a chain of related Platforms, Samples, and/or Series records. Related standards have changed: Previous values: New values: bsg-s000177: Minimum Information About a Microarray Experiment Organisations have changed: Previous values: GEO repository New values: GEO repository National Center for Biotechnology Information|National Library of Medicine|National Institutes of Health|Bethesda|Maryland|USA
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Conditions of Use
NCBI GEO: mining tens of millions of expression profiles--database and tools update.
Barrett T,Troup DB,Wilhite SE,Ledoux P,Rudnev D,Evangelista C,Kim IF,Soboleva A,Tomashevsky M,Edgar R
Nucleic Acids Res 2006
NCBI GEO: mining millions of expression profiles--database and tools.
Barrett T,Suzek TO,Troup DB,Wilhite SE,Ngau WC,Ledoux P,Rudnev D,Lash AE,Fujibuchi W,Edgar R
Nucleic Acids Res 2004
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Edgar R,Domrachev M,Lash AE
Nucleic Acids Res 2001
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No syntax standards defined
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The Rat Genome Database stores genetic, genomic, phenotype, and disease data generated from rat research. It provides access to corresponding data for eight other species, allowing cross-species comparison. Data curation is performed both manually and via an automated pipeline, giving RGD users integrated access to a wide variety of data to support their research.
Gene Expression Omnibus
The Gene Expression Omnibus (GEO) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the studies and gene expression patterns stored in GEO.
A CLAssification of Mobile genetic Elements
ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.
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This record is maintained by barrett
GEO repository (Government body)
National Center for Biotechnology Information (NCBI), Rockville, MD, USA (Government body)