Open Microscopy Environment eXtensible Markup Language
Abbreviation: OME-XML
Homepage https://docs.openmicroscopy.org/ome-model/6.2.2/ome-xml/index.html
Countries that developed this resource France , Italy , United Kingdom , United States
Created in 2005
Taxonomic range
Knowledge Domains
Subjects
User-defined Tags
How to cite this record FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Apr 21 2021 6:52 p.m.
Record updated: Feb. 6, 2021, 9:59 a.m. by The FAIRsharing Team.
blog | Open Microscopy Blog |
forum | Issue Tracker |
Mailing List | OME-XML Mailing List |
online documentation | OME-XML Specification (html) |
online documentation | OME Data Model and File Formats Document ... |
schema file | Schema |
Additional Information
Contact | Jason Swedlow ORCID |
OMERO client-server software | http://www.openmicroscopy.org/info/omero |
https://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
No XSD schemas defined
Conditions of Use
Applies to: Data use- Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported (CC BY-NC-SA 3.0)
- Creative Commons Attribution 4.0 International (CC BY 4.0)
Data Release
View and Download all Schema Versions | https://www.openmicroscopy.org/Schemas/ |
Metadata matters: access to image data in the real world
Linkert M,Rueden CT,Allan C,Burel JM,Moore W,Patterson A,Loranger B,Moore J,Neves C,Macdonald D,Tarkowska A,Sticco C,Hill E,Rossner M,Eliceiri KW,Swedlow JR
J Cell Biol 2010
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging.
Goldberg IG,Allan C,Burel JM,Creager D,Falconi A,Hochheiser H,Johnston J,Mellen J,Sorger PK,Swedlow JR
Genome Biol 2005
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
IDR is a prototype platform for publishing, mining and integrating bioimaging data at scale, following the Euro-BioImaging/ELIXIR imaging strategy using the OMERO and Bio-Formats open source software built by the Open Microscopy Environment. Deployed on an OpenStack cloud running on the EMBL-EBI’s Embassy resource, it includes image data linked to independent studies from genetic, RNAi, chemical, localisation and geographic high content screens, super-resolution microscopy, and digital pathology.
SSBD: Systems Science of Biological Dynamics
SSBD is a database that collects and shares quantitative biological dynamics data, microscopy images, and software tools. SSBD provides a rich set of resources for analyzing quantitative biological data, such as single-molecule, cell, and gene expression nuclei. Quantitative biological data are collected from a variety of species, sources and methods. These include data obtained from both experiment and computational simulation.
This record is not implemented by any policy.
Record Maintainer
Funds
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
The Wellcome Trust, UK (Charitable foundation)
Maintains
Grant Number(s)
095931/Z/11/Z (The Wellcome Trust, UK)
BB/G022585/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/L024233/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)