Mammalian Phenotype Ontology
How to cite this record: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: Feb. 22, 2018, 2:02 p.m.; Last accessed: Mar 18 2018 7:17 p.m.
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|Contact||Cynthia L Smith ORCID|
|Mammalian Phenotype Ontology-Download Latest Version||http://www.informatics.jax.org/downloads/reports/index.html#pheno|
No XSD schemas defined
Conditions of UseApplies to: Data use
REST Web Services
|Access our MouseMine data via our Application Programming Interface (API). We provide client libraries in the following languages: Perl, Python, Ruby, Java||http://www.mousemine.org/mousemine/api.do|
The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.
Smith CL,Goldsmith CA,Eppig JT
Genome Biol 2005
The mammalian phenotype ontology: enabling robust annotation and comparative analysis.
Smith CL,Eppig JT
Wiley Interdiscip Rev Syst Biol Med 2010
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data.
Smith CL,Eppig JT
Mamm Genome 2012
No semantic standards defined
Models and Formats
No syntax standards defined
Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public sources. MPD has three major types of strain-centric data sets: phenotype strain surveys, SNP and variation data, and gene expression strain surveys.
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Rat Genome Database
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Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. Data includes gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.
MouseMine @ MGI
A database of integrated mouse data from MGI, powered by InterMine. MouseMine is member of InterMOD, a consortium of model organism databases dedicated to making cross-species data analysis easier through ongoing coordination and collaborative system development.
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Deciphering the Mechanisms of Developmental Disorders
Initiated in 2013, DMDD has the ambitious goal of identifying all embryonic lethal knockout lines made at the Wellcome Trust Sanger institute, through their work as a major centre for creation of individual mouse gene knockouts. DMDD uses a combination of comprehensive 3D imaging, tissue histology, immunocytochemistry and transcriptomics to identify abnormalities in embryo and placental structure for each embryonic lethal line. All data is made freely available via this web site, enabling individual researchers to identify lines relevant to their own research. The DMDD programme is coordinating its work with similar international efforts through the umbrella of the International Mouse Phenotyping Consortium.
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HG000330 (National Human Genome Research Institute)