PSI Molecular Interaction Controlled Vocabulary
Abbreviation: PSI-MI CV
Countries that developed this resource United Kingdom
Created in 2017
In the following recommendations:
How to cite this record FAIRsharing.org: PSI-MI CV; PSI Molecular Interaction Controlled Vocabulary; DOI: https://doi.org/10.25504/FAIRsharing.8qzmtr; Last edited: March 11, 2019, 11:07 a.m.; Last accessed: Jan 25 2021 3:51 p.m.
Record updated: March 11, 2019, 10:39 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.8qzmtr' by 'The FAIRsharing Team' at 10:39, 11 Mar 2019 (approved): 'licences' has been modified: Before: After: Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data Added: Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data Removed: 'organizations' has been modified: Before: HUPO-PSI initiative; MI administrators|http://www.psidev.info/groups/molecular-interactions|Maintains After: HUPO-PSI initiative; MI administrators|http://www.psidev.info/groups/molecular-interactions|Maintains European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains Added: European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains Removed: 'supportLinks' has been modified: Before: online documentation|http://www.psidev.info/groups/molecular-interactions After: firstname.lastname@example.org email@example.com online documentation|http://www.psidev.info/groups/molecular-interactions online documentation|https://github.com/HUPO-PSI/psi-mi-CV Added: firstname.lastname@example.org email@example.com online documentation|https://github.com/HUPO-PSI/psi-mi-CV Removed: 'yearOfCreation' has been modified: Before: None After: 2017
Edits to 'https://fairsharing.org/FAIRsharing.8qzmtr' by 'The FAIRsharing Team' at 12:24, 07 Aug 2018 (approved): 'homepage' has been modified: Before: https://www.ebi.ac.uk/ols/ontologies/mi After: http://www.psidev.info/groups/molecular-interactions
Edits to 'https://fairsharing.org/FAIRsharing.8qzmtr' by 'The FAIRsharing Team' at 19:12, 17 Jul 2018 (approved): 'homepage' has been modified: Before: http://www.psidev.info/groups/molecular-interactions After: https://www.ebi.ac.uk/ols/ontologies/mi
Edits to 'https://fairsharing.org/FAIRsharing.8qzmtr' by 'The FAIRsharing Team' at 11:41, 30 Nov 2017 (approved): 'bioportal_abbreviation' has been modified: Before: MI After: MI
Edits to 'https://fairsharing.org/FAIRsharing.8qzmtr' by 'The FAIRsharing Team' at 12:56, 01 Mar 2017 (approved): 'name' has been modified: Before: Molecular Interaction After: PSI Molecular Interaction Controlled Vocabulary
Edits to 'https://fairsharing.org/FAIRsharing.8qzmtr' by 'The FAIRsharing Team' at 13:15, 28 Feb 2017 (approved): 'homepage' has been modified: Before: http://purl.bioontology.org/ontology/MI After: http://www.psidev.info/groups/molecular-interactions
Edits to 'https://fairsharing.org/FAIRsharing.8qzmtr' by 'The FAIRsharing Team' at 13:08, 28 Feb 2017 (approved): 'description' has been modified: Before: "Molecular Interaction" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/MI. This text was generated automatically. If you work on the project responsible for "Molecular Interaction" then please consider helping us by claiming this record and updating it appropriately. After: Please note: We cannot find an up-to-date website or official reporting guideline document for this resource. As such, we have marked it as Uncertain. Please contact us if you have any information on the current status of this resource.
|support email||General Contact|
|support email||Pablo Porras Millan|
|online documentation||Molecular Interactions Working Group|
|online documentation||GitHub Repository|
No XSD schemas defined
Conditions of UseApplies to: Data use
No publications available
Models and Formats
No identifier schema standards defined
No metrics standards defined
This computational biology resource mainly focuses on annotation and detection of eukaryotic linear motifs (ELMs) by providing both a repository of annotated motif data and an exploratory tool for motif prediction. ELMs, or short linear motifs (SLiMs), are compact protein interaction sites composed of short stretches of adjacent amino acids.
Molecular INTeraction database
MINT focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. As of September 2013, This resource uses the IntAct database framework to help reduce the effort of scientists and improve on IT development. MINT is an ELIXIR Core Resource.
modMine is an integrated web resource of data and tools to browse and search modENCODE data and experimental details, download results and access the GBrowse genome browser.
Protein Interaction Network Analysis platform
Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization, and management. It integrates protein-protein interaction (PPI) data from public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. In particular, it provides a variety of built-in tools to filter and analyze the networks for gaining biological and functional insights into the network.
Agile Protein Interactomes Dataserver
APID Interactomes (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). The interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.
MatrixDB: Extracellular Matrix Interaction Database
MatrixDB stores experimental data established by full-length proteins, matricryptins, glycosaminoglycans, lipids and cations. MatrixDB reports interactions with individual polypeptide chains or with multimers (e.g. collagens, laminins, thrombospondins) when appropriate. Multimers are treated as permanent complexes, referencing EBI identifiers when possible. Human interactions were inferred from non-human homologous interactions when available.
mentha archives evidence collected from different sources and presents these data in a complete and comprehensive way. Its data comes from manually curated protein-protein interaction databases that have adhered to the IMEx consortium. The aggregated data forms an interactome which includes many organisms. mentha is a resource that offers a series of tools to analyse selected proteins in the context of a network of interactions.
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms. The majority of complexes are made up of proteins but may also include nucleic acids or small molecules. All data is freely available for search and download.
BovineMine integrates the bovine reference genome assembly with many other biological data sets, including genomes of other species. The sheep and goat genomes allow comparison across ruminants. Model organism data (human, mouse, rat) allow well-curated data sets to be applied to ruminants using orthology.
CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (64%), mouse (16%) and rat (12%). Each protein complex is described by a protein complex name, subunit composition, function as well as the literature reference that characterizes the respective protein complex.
The LEAFDATA resource collects information from primary research articles focusing on Arabidopsis leaf growth and development. The result section of selected papers is manually annotated and organized into distinct categories. Text fragments of the manuscripts are displayed with links to the original papers on PubMed.
Scroll for more...
HUPO-PSI initiative; MI administrators (Consortium) Lead