standards > reporting guideline > DOI:10.25504/FAIRsharing.x6dcc7
FAIRsharing is now available for record creation, update, and search at https://beta.fairsharing.org, please visit us there! This read-only version of the legacy site will be replaced with the new version of FAIRsharing in the coming weeks.


ready Minimum Information about an ENVironmental transcriptomic experiment

Abbreviation: MIAME/Env


General Information
MIAME defines a conceptual structure for defining the core information that is common to most microarray experiments. MIAME/Env is an extension of these guidelines to cover environmental genomics.

Homepage http://nebc.nox.ac.uk/miame/miame_env.html

Countries that developed this resource United Kingdom

Created in 2003

Taxonomic range

Subjects 

User-defined Tags





How to cite this record FAIRsharing.org: MIAME/Env; Minimum Information about an ENVironmental transcriptomic experiment; DOI: https://doi.org/10.25504/FAIRsharing.x6dcc7; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Oct 17 2021 1:28 a.m.


Record updated: Sept. 5, 2016, 9:49 a.m. by The FAIRsharing Team.

Show edit history


In Collections
Minimum Information for Biological and Biomedical Investigations
ISO/CD 20691 Collection - DRAFT
RDA Covid-19 WG Resources


Support

General

Mailing List None
online documentation http://mibbi.sourceforge.net/projects/MI ...
online documentation http://nebc.nox.ac.uk/miame/MIAME1.6-env ...

Additional Information

Contact NEBC Team

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

Annotation of environmental OMICS data: application to the transcriptomics domain.

Morrison N,Wood AJ,Hancock D,Shah S,Hakes L,Gray T,Tiwari B,Kille P,Cossins A,Hegarty M,Allen MJ,Wilson WH,Olive P,Last K,Kramer C,Bailhache T,Reeves J,Pallett D,Warne J,Nashar K,Parkinson H,Sansone SA,Rocca-Serra P,Stevens R,Snape J,Brass A,Field D
OMICS 2006

View Paper (PubMed) View Publication

Related Standards

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (5)
Tomato Functional Genomics Database
The Tomato Functional Genomics Database integrates several prior databases including the Tomato Expression Database and Tomato Metabolite Database, and the Tomato Small RNA Database.
ArrayExpress
ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Experiments are submitted directly to ArrayExpress or are imported from the NCBI GEO database.
Gene Expression Omnibus
The Gene Expression Omnibus (GEO) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the studies and gene expression patterns stored in GEO.
Stanford Microarray Database
The Stanford Microarray Database is a repository a microarray based gene expression and comparative genomics data. This resource is no longer being maintained please us public repositories NCBI Gene Expression Omnibus or EBI Array Express
Chemical Effects in Biological Systems
The Chemical Effects in Biological Systems (CEBS) database houses data of interest to environmental health scientists. CEBS is a public resource, and has received depositions of data from academic, industrial, and governmental laboratories.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Maintains