standards > reporting guideline > DOI:10.25504/FAIRsharing.32b10v
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ready Minimum Information About a Microarray Experiment

Abbreviation: MIAME


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General Information
MIAME is intended to specify all the information necessary for an unambiguous interpretation of a microarray experiment, and potentially to reproduce it. MIAME defines the content but not the format for this information.

Homepage http://www.fged.org/projects/miame/

Countries that developed this resource Belgium , France , Germany , Netherlands , United Kingdom , United States

Created in 1999

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How to cite this record FAIRsharing.org: MIAME; Minimum Information About a Microarray Experiment; DOI: https://doi.org/10.25504/FAIRsharing.32b10v; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Sep 25 2021 10:13 p.m.


Record updated: Feb. 6, 2021, 10:12 a.m. by The FAIRsharing Team.

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In Collections
National Child Development Study (UK)
FAIRDOM Community Standards
Minimum Information for Biological and Biomedical Investigations
ISO/CD 20691 Collection - DRAFT
RDA Covid-19 WG Resources


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Additional Information

Contact Alvis Brazma   ORCID


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Publications

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Brazma A,Hingamp P,Quackenbush J,Sherlock G,Spellman P,Stoeckert C,Aach J,Ansorge W,Ball CA,Causton HC,Gaasterland T,Glenisson P,Holstege FC,Kim IF,Markowitz V,Matese JC,Parkinson H,Robinson A,Sarkans U,Schulze-Kremer S,Stewart J,Taylor R,Vilo J,Vingron M
Nat Genet 2001

View Paper (PubMed) View Publication

Minimum Information About a Microarray Experiment (MIAME)--successes, failures, challenges.

Brazma A
ScientificWorldJournal 2009

View Paper (PubMed) View Publication


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Interferome
This database enables the reliable identification of an individual Interferon Regulated Gene (IRG) or IRG signatures from high-throughput data sets (i.e. microarray, proteomic data etc.). It also assists in identifying regulatory elements, chromosomal location and tissue expression of IRGs in human and mouse. This upgraded version, Interferome v2.0 has quantitative data, more detailed annotation and search capabilities and can be queried for one to a thousand genes, such as from from a microarray experiment.
Longhorn Array Database
The Longhorn Array Database (LAD) is a MIAME‐compliant microarray database that operates on PostgreSQL and Linux. It is a free, completely open‐source, and provides a systematic and proven environment in which vast experiment sets can be safely archived, securely accessed, biologically annotated, quantitatively analyzed, and visually explored. This unit provides the complete set of information needed to successfully deploy, configure, and use LAD for the purposes of two‐color DNA microarray analysis and visualization.
BarleyBase
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Genomic Expression Archive
Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design.

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