How to cite this record FAIRsharing.org: MIAPE; Minimum Information About a Proteomics Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8vv5fc; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jun 21 2021 8:36 a.m.

Publication for citation The minimum information about a proteomics experiment (MIAPE). Taylor CF,Paton NW,Lilley KS et al.; Nat Biotechnol ; 2007; 10.1038/nbt1329;

This record is maintained by javizca ORCID and HUPO PSI (HUPOPSI)

Record updated: Feb. 6, 2021, 10:27 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/FAIRsharing.8vv5fc' by 'The FAIRsharing Team' at 10:27, 06 Feb 2021 (approved):

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			The minimum information about a proteomics experiment (MIAPE).|Taylor CF,Paton NW,Lilley KS,Binz PA,Julian RK Jr,Jones AR,Zhu W,Apweiler R,Aebersold R,Deutsch EW,Dunn MJ,Heck AJ,Leitner A,Macht M,Mann M,Martens L,Neubert TA,Patterson SD,Ping P,Seymour SL,Souda P,Tsugita A,Vandekerckhove J,Vondriska TM,Whitelegge JP,Wilkins MR,Xenarios I,Yates JR 3rd,Hermjakob H|Nat Biotechnol|2007
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			The minimum information about a proteomics experiment (MIAPE).|Taylor CF,Paton NW,Lilley KS et al.|Nat Biotechnol|2007
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			The minimum information about a proteomics experiment (MIAPE).|Taylor CF,Paton NW,Lilley KS et al.|Nat Biotechnol|2007
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			The minimum information about a proteomics experiment (MIAPE).|Taylor CF,Paton NW,Lilley KS,Binz PA,Julian RK Jr,Jones AR,Zhu W,Apweiler R,Aebersold R,Deutsch EW,Dunn MJ,Heck AJ,Leitner A,Macht M,Mann M,Martens L,Neubert TA,Patterson SD,Ping P,Seymour SL,Souda P,Tsugita A,Vandekerckhove J,Vondriska TM,Whitelegge JP,Wilkins MR,Xenarios I,Yates JR 3rd,Hermjakob H|Nat Biotechnol|2007

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Edits to 'https://fairsharing.org/FAIRsharing.8vv5fc' by 'The FAIRsharing Team' at 16:14, 17 Dec 2019 (approved):

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Edits to 'https://fairsharing.org/FAIRsharing.8vv5fc' by 'The FAIRsharing Team' at 23:05, 12 Jul 2018 (approved):

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Edits to 'https://fairsharing.org/FAIRsharing.8vv5fc' by 'The FAIRsharing Team' at 17:59, 31 Aug 2016 (approved):

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		Before: The context-sensitive nature of transcriptome, metabolome and proteome data necessitates the capture of a richer set of metadata (data about the data) than is required for basic genetic sequence, where usually knowing the organism of origin will suffice. The use of paper citations as proxies for actual metadata hinders the reassessment of data sets, and obstructs non-standard searching (e.g. by the order that different liquid chromatography columns were coupled). The requirements of the various journals also differ, so important detail may be lacking in some cases, or presented in an esoteric fashion. There is then a need for public repositories that contain information from whole proteomics experiments; making explicit both where samples came from|and how analyses of them were performed. MIAPE attempts to define the minimum set of information about a proteomics experiment that would be required by such a repository.
		After: MIAPE attempts to define the minimum set of information about whole proteomics experiments that would be required by  a public repository. Related standards have changed:  Previous values: bsg-s000073: Sample processing and separation techniques bsg-s000111: imaging mz Markup Language bsg-s000112: mz Markup Language bsg-s000121: Molecular Interaction eXtensible Markup Language bsg-s000179: Minimum Information about a Molecular Interaction Experiment bsg-s000280: Minimum Information About a Peptide Array Experiment bsg-s000516: MIAPE: Mass Spectrometry Quantification bsg-s000607: MIAPE: Mass Spectrometry bsg-s000608: MIAPE: Mass Spectrometry Informatics bsg-s000609: MIAPE: Gel Electrophoresis bsg-s000610: MIAPE: Gel Informatics bsg-s000611: MIAPE: Column Chromatography bsg-s000612: MIAPE: Capillary Electrophoresis New values:  bsg-s000611: MIAPE: Column Chromatography bsg-s000609: MIAPE: Gel Electrophoresis bsg-s000610: MIAPE: Gel Informatics bsg-s000179: Minimum Information about a Molecular Interaction Experiment bsg-s000073: Sample processing and separation techniques bsg-s000111: imaging mz Markup Language bsg-s000112: mz Markup Language bsg-s000121: Molecular Interaction eXtensible Markup Language bsg-s000280: Minimum Information About a Peptide Array Experiment bsg-s000516: MIAPE: Mass Spectrometry Quantification bsg-s000608: MIAPE: Mass Spectrometry Informatics bsg-s000607: MIAPE: Mass Spectrometry bsg-s000612: MIAPE: Capillary Electrophoresis Domain list has changed:  Previous values: Assay|process|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11025 Protein|material|http://purl.org/obo/owl/GO#GO_0003675 Proteomics|property| New values:  Assay|process|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11025 Protein|material|http://purl.org/obo/owl/GO#GO_0003675 Proteomics|property| Life Science|domain| Organisations have changed:  Previous values: Human Proteome Organisation - Proteomics Standards Initiative  New values:  Human Proteome Organisation - Proteomics Standards Initiative  Human Proteome Organisation - Proteomics Standards Initiative

Edits to 'https://fairsharing.org/FAIRsharing.8vv5fc' by 'The FAIRsharing Team' at 16:15, 01 Aug 2016 (approved):

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In Collections

FAIRDOM Community Standards

HUPO Proteomics Standards Initiative

Minimum Information for Biological and Biomedical Investigations

ISO/CD 20691 Collection - DRAFT

Support

General

Mailing List	PSI mailing list
online documentation	Original MIBBI entry
online documentation	MIAPE Documents

Additional Information

Contact

Juan Antonio Vizcaino ORCID

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Release

Specification Article

https://www.nature.com/articles/nbt1329.pdf

Publications

The minimum information about a proteomics experiment (MIAPE).

Taylor CF,Paton NW,Lilley KS et al.
Nat Biotechnol 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Terminology Artifacts

Sample processing and separations controlled vocabulary

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (5)

PRoteomics IDEntifications database
The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.

The Global Proteome Machine Database
The Global Proteome Machine Database (gpmDB holds the minimum amount of information necessary for common bioinformatics-related tasks (such as sequence assignment validation) rather than being a complete record of a proteomics experiment. It was also created to aid in the process of validating peptide MS/MS spectra as well as protein coverage patterns. Most of the data is held in a set of XML files: the database serves as an index to those files, allowing for rapid lookups and reduced database storage requirements.

World-2DPAGE Repository
A public standards-compliant repository for gel-based proteomics data linked to protein identification published in the literature. The repository is continuously extended, putting together a large collection of multi-species reference maps, with thousands of identified spots..

ProteomeXchange
The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination.

ProteoRed
Carlos III Networked Proteomics Platform, ProteoRed-ISCIII is a National Network for the coordination, integration and development of the Spanish Proteomics Facilities providing proteomics services for supporting Spanish researchers in the field of proteomics.

Implementing Policies

Credit

Record Maintainer

This record is maintained by javizca ORCID and HUPO PSI (HUPOPSI)

Funds

Proteomics Standards Initiative (PSI) - Human Proteomics Organisation (HUPO) (Consortium) Lead

Maintains

Proteomics Standards Initiative (PSI) - Human Proteomics Organisation (HUPO) (Consortium) Lead

Minimum Information About a Proteomics Experiment

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