Gene Feature File version 1
Developed in Worldwide
Scope and data types
How to cite this record FAIRsharing.org: GFF; Gene Feature File version 1; DOI: https://doi.org/10.25504/FAIRsharing.qaaj0q; Last edited: Feb. 22, 2018, 2:03 p.m.; Last accessed: Aug 20 2018 9:04 p.m.
Record updated: Nov. 25, 2016, 10:54 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.qaaj0q' by 'The FAIRsharing Team' at 21:38, 19 Oct 2016 (approved): 'shortname' has been modified: Before: Gene Feature File version 1 After: GFF
Edits to 'https://fairsharing.org/FAIRsharing.qaaj0q' by 'The FAIRsharing Team' at 10:43, 25 Nov 2016 (approved): 'description' has been modified: Before: "Gene Feature File version 1" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://www.sanger.ac.uk/resources/software/gff/spec.html. This text was generated automatically. If you work on the project responsible for "Gene Feature File version 1" then please consider helping us by claiming this record and updating it appropriately. After: The GFF file format stands for "Gene Finding Format" and was invented at the Sanger Centre. GFF is a supported format in GMOD, but it is now deprecated and if you have a choice you should use GFF3.
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This project aims to support the international Aspergillus research community by gathering all genomic information regarding this significant genus into one resource - The Central Aspergillus REsource (CADRE). CADRE facilitates visualisation and analyses of data using the Ensembl software suite. Much of our data has been extracted from Genbank and augmented with the consent of the original sequencing groups. This additional work has been carried out using both automated and manual efforts, with support from specific annotation projects and the general Aspergillus community.
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcript, the region scanned extends from 10,000bp upstream of the transcript start to 50bp downstream of the coding sequence start. Therefore, the database contains putative binding sites in the gene promoter and in the initial introns and non-coding exons. Information displayed for each putative binding site includes the transcription factor name, its position (absolute on the chromosome, or relative to the gene), the score of the prediction, and the region of the gene the site belongs to. If the selected gene has homologs in any of the other two organisms, the program optionally displays the putative TFBSs in the homologs.
UCSC Genome Browser database
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.
Plant Promoter Database
Genome-wide plant promoter database for several plant species, including Arabidopsis thaliana, rice, poplar, and Physcomitrella patens.
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