Gene Transfer Format
How to cite this record FAIRsharing.org: GTF; Gene Transfer Format; DOI: https://doi.org/10.25504/FAIRsharing.sggb1n; Last edited: Jan. 8, 2019, 1:39 p.m.; Last accessed: Jul 03 2020 5:11 p.m.
Record updated: Nov. 21, 2018, 10:45 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.sggb1n' by 'The FAIRsharing Team' at 10:45, 21 Nov 2018 (not approved): 'domains' has been modified: Before: Annotation Deoxyribonucleic acid (DNA) Life Science After: Annotation DNA sequence data Deoxyribonucleic acid (DNA) Life Science Added: DNA sequence data Removed: 'contact' has been modified: Before: After: None
Edits to 'https://fairsharing.org/FAIRsharing.sggb1n' by 'The FAIRsharing Team' at 13:28, 20 Oct 2016 (approved): 'homepage' has been modified: Before: http://genome.ucsc.edu/FAQ/FAQformat.html#format4 After: http://mblab.wustl.edu/GTF22.html
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Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. UCSC coordinated data for the ENCODE Consortium from its inception in 2003 (Pilot phase) to the end of the first 5 year phase of whole-genome data production in 2012. All data produced by ENCODE investigators and the results of ENCODE analysis projects from this period are hosted in the UCSC Genome browser and database.
modMine is an integrated web resource of data and tools to browse and search modENCODE data and experimental details, download results and access the GBrowse genome browser.
UCSC Genome Browser database
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.
PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.
The UCSC Archaeal Genome Browser
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.
Ensembl creates, integrates and distributes reference datasets and analysis tools that enable genomics. Ensembl is a genome browser that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation. Ensembl annotate genes, computes multiple alignments, predicts regulatory function and collects disease data.
The MOuse NOnCode Lung database
MONOCLdb is an integrative and interactive database designed to retrieve and visualize annotations and expression profiles of long-non coding RNAs (lncRNAs) expressed in Collaborative Cross (http://compgen.unc.edu/) founder mice in response to respiratory influenza and SARS infections.
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Washington University in St Louis, USA (University)