standards > model/format > DOI:10.25504/FAIRsharing.54814g
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ready MDL reaction Format

Abbreviation: RXN


General Information
MDL reaction Format is used to describe the kinetics of chemical reactions and the chemical structure of the reactants and products.



How to cite this record FAIRsharing.org: RXN; MDL reaction Format; DOI: https://doi.org/10.25504/FAIRsharing.54814g; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Apr 06 2020 7:15 a.m.


Record updated: Oct. 22, 2016, 7:30 p.m. by The FAIRsharing Team.

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Implementing Databases (2)
Rhea
Rhea is a comprehensive and non-redundant resource of expert-curated chemical and transport reactions of biological interest. Rhea can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analysis. Rhea describes enzyme-catalyzed reactions covering the IUBMB Enzyme Nomenclature list as well as additional reactions, including spontaneously occurring reactions. Rhea is built on ChEBI (Chemical Entities of Biological Interest) ontology of small molecules to describe its reaction participants. Since December 2018, Rhea is the standard for enzyme annotation in UniProt.

PathBank
PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.

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