standards > model/format > DOI:10.25504/FAIRsharing.k97xzh
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ready Sequence Alignment Map

Abbreviation: SAM


General Information
The Sequence Alignment/Map (SAM) format is a TAB-delimited text format consisting of a header section, which is optional, and an alignment section.

Homepage https://github.com/samtools/samtools

Countries that developed this resource China , United Kingdom , United States

Created in 2008

Taxonomic range

Subjects 




How to cite this record FAIRsharing.org: SAM; Sequence Alignment Map; DOI: https://doi.org/10.25504/FAIRsharing.k97xzh; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Sep 20 2021 2:30 a.m.


Record updated: Nov. 28, 2016, 3:55 p.m. by The FAIRsharing Team.

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General

Additional Information


Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

The Sequence Alignment/Map format and SAMtools.

Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup
Bioinformatics 2009

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (2)
modMine
modMine is an integrated web resource of data and tools to browse and search modENCODE data and experimental details, download results and access the GBrowse genome browser.

RhesusBase
A comprehensive online knowledgebase for the monkey research community.

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