Wiggle Track Format
Developed in United States
Knowledge Domains BETA
How to cite this record FAIRsharing.org: WIG; Wiggle Track Format; DOI: https://doi.org/10.25504/FAIRsharing.2nrf9f; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Mar 18 2019 5:40 p.m.
Record updated: July 11, 2017, 1:45 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.2nrf9f' by 'The FAIRsharing Team' at 13:45, 11 Jul 2017 (approved): 'name' has been modified: Before: Wiggle Format After: Wiggle Track Format
Edits to 'https://fairsharing.org/FAIRsharing.2nrf9f' by 'The FAIRsharing Team' at 19:31, 17 Oct 2016 (approved): 'description' has been modified: Before: "Wiggle Format" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://genome.ucsc.edu/goldenPath/help/wiggle.html. This text was generated automatically. If you work on the project responsible for "Wiggle Format" then please consider helping us by claiming this record and updating it appropriately. After: The wiggle (WIG) format is an older format for display of dense, continuous data such as GC percent, probability scores, and transcriptome data.
No guidelines defined
No semantic standards defined
Models and Formats
No identifier schema standards defined
No metrics standards defined
Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. UCSC coordinated data for the ENCODE Consortium from its inception in 2003 (Pilot phase) to the end of the first 5 year phase of whole-genome data production in 2012. All data produced by ENCODE investigators and the results of ENCODE analysis projects from this period are hosted in the UCSC Genome browser and database.
modMine is an integrated web resource of data and tools to browse and search modENCODE data and experimental details, download results and access the GBrowse genome browser.
UCSC Genome Browser database
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.
The UCSC Archaeal Genome Browser
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.
A comprehensive online knowledgebase for the monkey research community.
The Ensembl project is based at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
The MGA Data Repository
The Mass Genome Annotation (MGA) Data Repository stores published next generation sequencing data and other genome annotation data (such as gene start sites, SNPs, etc.) that, in conjunction with the ChIP-Seq and SSA servers, can be accessed and studied by scientists. The main characteristic of the MGA database is to store mapped data (in the form of genomic coordinates of mapped reads) and not sequence files. In this way, each sample present in the database has been pre-processed (for example sequence reads has been mapped to a genome) and presented in a standardized text format
Scroll for more...
This record is not implemented by any policy.
This record is in need of a maintainer. If you login, you'll be able to claim this record.