standards > model/format > DOI:10.25504/FAIRsharing.mcgj5b


ready Distributed Sequence Annotation System

Abbreviation: DAS


General Information
The Distributed Annotation System (DAS) defines a communication protocol used to exchange annotations on genomic or protein sequences.

Homepage http://www.biodas.org/documents/spec-1.6.html

Countries that developed this resource United States

Created in 2000

Taxonomic range

Subjects 




How to cite this record FAIRsharing.org: DAS; Distributed Sequence Annotation System; DOI: https://doi.org/10.25504/FAIRsharing.mcgj5b; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Sep 19 2019 11:50 p.m.


Record updated: Oct. 24, 2016, 7:05 p.m. by The FAIRsharing Team.

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Support

General

FAQ http://biodas.open-bio.org/wiki/DasFAQ
Mailing List None
online documentation http://biodas.open-bio.org/wiki/Main_Pag ...

Additional Information

Contact Contact

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

The distributed annotation system.

Dowell RD,Jokerst RM,Day A,Eddy SR,Stein L
BMC Bioinformatics 2001

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (4)
Gene3D
Gene3D takes CATH domain families (from PDB structures) and assigns them to the millions protein sequences (using Hidden Markov models generated from HMMER) with no PDB structures.
SNPedia
SNPedia is a wiki resource of the functional consequences of human genetic variation as published in peer-reviewed studies. Entries are formatted to allow associations to be assigned to single genotypes as well as sets of genotypes (genosets). Curation occurs through editorial, community/user, and semi-automated processes.
The MOuse NOnCode Lung database
MONOCLdb is an integrative and interactive database designed to retrieve and visualize annotations and expression profiles of long-non coding RNAs (lncRNAs) expressed in Collaborative Cross (http://compgen.unc.edu/) founder mice in response to respiratory influenza and SARS infections.
openSNP
A crowdsourced collection of personal genomics data. Includes SNP genotyping, exome sequencing data, phenotypic annotation and quantified self tracking data.

Implementing Policies

This record is not implemented by any policy.


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