standards > model/format > DOI:10.25504/FAIRsharing.mcgj5b


ready Distributed Sequence Annotation System

Abbreviation: DAS


General Information
The Distributed Annotation System (DAS) defines a communication protocol used to exchange annotations on genomic or protein sequences.

Homepage http://www.biodas.org/documents/spec-1.6.html

Countries that developed this resource United States

Created in 2000

Taxonomic range

Subjects 




How to cite this record FAIRsharing.org: DAS; Distributed Sequence Annotation System; DOI: https://doi.org/10.25504/FAIRsharing.mcgj5b; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: May 11 2021 10:36 a.m.


Record updated: Oct. 24, 2016, 7:05 p.m. by The FAIRsharing Team.

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Support

General

FAQ http://biodas.open-bio.org/wiki/DasFAQ
Mailing List None
online documentation http://biodas.open-bio.org/wiki/Main_Pag ...

Additional Information

Contact Contact

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

The distributed annotation system.

Dowell RD,Jokerst RM,Day A,Eddy SR,Stein L
BMC Bioinformatics 2001

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (4)
Gene3D
Gene3D uses the information in CATH to predict the locations of structural domains on millions of protein sequences available in public databases. Sequence data from UniProtKB and Ensembl for domains with no experimentally determined structures are scanned against CATH HMMs to predict domain sequence boundaries and make homologous superfamily assignments.
SNPedia
SNPedia is a wiki resource of the functional consequences of human genetic variation as published in peer-reviewed studies. Entries are formatted to allow associations to be assigned to single genotypes as well as sets of genotypes (genosets). Curation occurs through editorial, community/user, and semi-automated processes.
The MOuse NOnCode Lung database
MONOCLdb is an integrative and interactive database designed to retrieve and visualize annotations and expression profiles of long-non coding RNAs (lncRNAs) expressed in Collaborative Cross (http://compgen.unc.edu/) founder mice in response to respiratory influenza and SARS infections.
openSNP
A crowdsourced collection of personal genomics data. Includes SNP genotyping, exome sequencing data, phenotypic annotation and quantified self tracking data.

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