Standards > model/format > DOI:10.25504/FAIRsharing.fd28en


ready macromolecular Crystallographic Information File

Abbreviation:mmCIF


General Information
macromolecular Crystallographic Information File (mmCIF) is a dictionary of data archiving the macromolecule crystallographic experiment and its results.

How to cite this record: FAIRsharing.org: mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 22, 2018, 1:58 p.m.; Last accessed: Apr 22 2018 1:15 p.m.




Record updated: Oct. 24, 2016, 7:47 p.m. by The FAIRsharing Team.





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No XSD schemas defined




Publications

STAR/mmCIF: an ontology for macromolecular structure.


Bioinformatics 2000

View Paper (PubMed)

Macromolecular Crystallographic Information File.

Bourne PE,Berman HM,McMahon B,Watenpaugh KD,Westbrook JD,Fitzgerald PM
Methods Enzymol 1997

View Paper (PubMed)

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Implementing Databases (9)
NRG-CING
Validated NMR structures of proteins and nucleic acids.

Chemical Component Dictionary
The Chemical Component Dictionary is an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.

Protein Data Bank in Europe
The Protein Data Bank in Europe is a founding member of the worldwide Protein Data Bank which collects, organises and disseminates data on biological macromolecular structures.

Protein Data Bank Japan
The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.

Ligand Expo
Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids. Tools are provided to search the PDB dictionary for chemical components, to identify structure entries containing particular small molecules, and to download the 3D structures of the small molecule components in the PDB entry.

RCSB Protein Data Bank
This resource is powered by the Protein Data Bank archive-information about the 3D shapes of proteins, nucleic acids, and complex assemblies that helps students and researchers understand all aspects of biomedicine and agriculture, from protein synthesis to health and disease. As a member of the wwPDB, the RCSB PDB curates and annotates PDB data. The RCSB PDB builds upon the data by creating tools and resources for research and education in molecular biology, structural biology, computational biology, and beyond.

Nucleic Acids Database
The NDB contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids.

eCrystals
eCrystals is the archive for Crystal Structures generated by the Southampton Chemical Crystallography Group and the EPSRC UK National Crystallography Service. It contains all the fundamental and derived data resulting from a single crystal X-ray structure determination, but excluding the raw images.

Electron Microscopy Data Bank
Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB was founded at EBI in 2002, under the leadership of Kim Henrick. Since 2007 it has been operated jointly by the PDBe, and the Research Collaboratory for Structural Bioinformatics (RCSB PDB) as a part of EMDataBank which is funded by a joint NIH grant to PDBe, the RCSB and the National Center for Macromolecular Imaging (NCMI).

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