Standards > model/format > DOI:10.25504/FAIRsharing.r0r2wd


ready Root System Markup Language

Abbreviation:RSML


General Information
RSML follows the XML standard to store 2D or 3D image metadata, plant and root properties and geometries, continuous functions along individual root paths and a suite of annotations at the image, plant or root scales, at one or several time points. Plant ontologies are used to describe botanical entities that are relevant at the scale of root system architecture. An xml-schema describes the features and constraints of RSML and open-source packages have been developed in several languages (R, Excel, Java, Python, C#) to enable researchers to integrate RSML files into popular research workflow.

How to cite this record: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: March 15, 2018, 11:56 a.m.; Last accessed: Apr 20 2018 4:12 a.m.




Record added: Feb. 20, 2015, 10:17 p.m.
Record updated: March 15, 2018, 10:13 a.m. by The FAIRsharing Team.


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Publications

Root system markup language: toward a unified root architecture description language.

Lobet G,Pound MP,Diener J,Pradal C,Draye X,Godin C,Javaux M,Leitner D,Meunier F,Nacry P,Pridmore TP,Schnepf A
Plant Physiol 2015

View Paper (PubMed) View Paper (DOI)

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  • P7/29 (Belgian Science Policy Interuniversity Attraction Poles Program (BELSPO), Belgium)

  • ANR–11–BSV6–0018 (The French National Research Agency (ANR), France)