standards > terminology artifact > DOI:10.25504/FAIRsharing.s19src


ready Systems Biology Ontology

Abbreviation: SBO


General Information
The Systems Biology Ontology is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modelling. It consists of seven orthogonal vocabularies defining: reaction participants roles (e.g. "substrate"), quantitative parameters (e.g. "Michaelis constant"), classification of mathematical expressions describing the system (e.g. "mass action rate law"), modelling framework used (e.g. "logical framework"), the nature of the entity (e.g. "macromolecule"), the type of interaction (e.g. "process"), as well as a branch to define the different types of metadata that may be present within a model. Use of such terms introduces a layer of semantic information into the standard description of a model, facilitating its interpretation and efficient reuse.



How to cite this record FAIRsharing.org: SBO; Systems Biology Ontology; DOI: https://doi.org/10.25504/FAIRsharing.s19src; Last edited: Jan. 17, 2019, 9:41 a.m.; Last accessed: Jan 18 2019 10:56 p.m.


This record is maintained by nsjuty

Record added: Jan. 21, 2016, 10:30 a.m.
Record updated: Jan. 17, 2019, 9:40 a.m. by The FAIRsharing Team.

Show edit history




Support

General

Additional Information

External Links


Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data


Publications

Controlled vocabularies and semantics in systems biology.

Courtot M,Juty N,Knupfer C,Waltemath D,Zhukova A,Drager A,Dumontier M,Finney A,Golebiewski M,Hastings J,Hoops S,Keating S,Kell DB,Kerrien S,Lawson J,Lister A,Lu J,Machne R,Mendes P,Pocock M,Rodriguez N,Villeger A,Wilkinson DJ,Wimalaratne S,Laibe C,Hucka M,Le Novere N
Mol Syst Biol 2011

View Paper (PubMed) View Publication

SBO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.




Implementing Databases (1)
BioModels
BioModels is a repository of computational models of biological processes. It allows users to search and retrieve mathematical models published in the literature. Many models are manually curated (to ensure reproducibility) and extensively cross-linked to publicly available reference information.

Implementing Policies

This record is not implemented by any policy.