standards > model/format > DOI:10.25504/FAIRsharing.27tnee


ready Open Modeling EXchange format

Abbreviation: OMEX


General Information
Open Modeling EXchange format (OMEX), together with the use of other standard formats from the Computational Modeling in Biology Network (COMBINE), is the basis of the COMBINE Archive, a single file that supports the exchange of all the information necessary for a modeling and simulation experiment in biology. An OMEX file is a ZIP container that includes a manifest file, listing the content of the archive, an optional metadata file adding information about the archive and its content, and the files describing the model.



How to cite this record FAIRsharing.org: OMEX; Open Modeling EXchange format; DOI: https://doi.org/10.25504/FAIRsharing.27tnee; Last edited: Feb. 22, 2018, 2:13 p.m.; Last accessed: Nov 19 2018 1:43 a.m.


This record is maintained by lenov  ORCID

Record added: May 19, 2016, 2:18 p.m.
Record updated: March 28, 2017, 11:36 a.m. by lenov.



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Applies to: Data use
  • Public domain




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COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.

Bergmann FT,Adams R,Moodie S,Cooper J,Glont M,Golebiewski M,Hucka M,Laibe C,Miller AK,Nickerson DP,Olivier BG,Rodriguez N,Sauro HM,Scharm M,Soiland-Reyes S,Waltemath D,Yvon F,Le Novere N
BMC Bioinformatics 2014

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  • 115156 (Innovative Medicines Initiative (IMI), Europe)

  • EP/I017909/1 (Engineering and Physical Sciences Research Council)

  • GM070923 (US National Institute of General Medical Sciences)

  • NIH P50-GM094503 (The Virtual Physiological Rat Project)