FAANG metadata sample specification standard

General Information

The FAANG metadata sample specification document describes the principles and structure for the FAANG metadata guidance. The main goal of the FAANG standards is to ensure all FAANG samples are well described and that the description is well structured. In the sample context, we consider donor animals, tissue samples, primary cells or any other biological material to be samples. The FAANG project will establish an infrastructure capable of efficiently analyzing genome-wide functional data for animal species.

Homepage https://github.com/FAANG/faang-metadata/blob/master/docs/faang_sample_metadata.md

Countries that developed this resource European Union , United Kingdom , United States

Created in 2016

Taxonomic range

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 14, 2020, 5:04 p.m.; Last accessed: Feb 28 2020 10:13 p.m.

Publication for citation FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community. Harrison PW,Fan J,Richardson D,Clarke L,Zerbino D,Cochrane G,Archibald AL,Schmidt CJ,Flicek P; Anim Genet ; 2018; 10.1111/age.12736;

This record is maintained by peter ORCID

Record added: June 24, 2016, 6:24 p.m.
Record updated: Feb. 14, 2020, 9:43 a.m. by peter.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.yedsf5' by 'peter' at 09:43, 14 Feb 2020 (approved):

	'publications' has been modified:
		Before:
		After:
			FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community.|Harrison PW,Fan J,Richardson D,Clarke L,Zerbino D,Cochrane G,Archibald AL,Schmidt CJ,Flicek P|Anim Genet|2018
		Added:
			FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community.|Harrison PW,Fan J,Richardson D,Clarke L,Zerbino D,Cochrane G,Archibald AL,Schmidt CJ,Flicek P|Anim Genet|2018
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.yedsf5' by 'The FAIRsharing Team' at 13:45, 13 Feb 2020 (approved):

	'organizations' has been modified:
		Before:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
			Functional Annotation of Animal Genomes (FAANG) Administrators|http://www.faang.org/|Maintains
		After:
			Functional Annotation of Animal Genomes (FAANG) Administrators|http://www.faang.org/|Maintains
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
		Added:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
		Removed:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined

	'description' has been modified:
		Before: The FAANG metadata sample specification document describes the principles and structure for the FAANG metadata guidance. The main goal of the FAANG standards is to ensure all FAANG samples are well described and that the description is well structured. We support the MIAME and MINSEQE guidelines, and aim to convert them to a concrete specification. The FAANG project will establish an infrastructure capable of efficiently analyzing genome-wide functional data for animal species.
		After: The FAANG metadata sample specification document describes the principles and structure for the FAANG metadata guidance. The main goal of the FAANG standards is to ensure all FAANG samples are well described and that the description is well structured. In the sample context, we consider donor animals, tissue samples, primary cells or any other biological material to be samples. The FAANG project will establish an infrastructure capable of efficiently analyzing genome-wide functional data for animal species.

	'onto_disciplines' has been modified:
		Before:
		After:
			Life Science
		Added:
			Life Science
		Removed:

	'onto_domains' has been modified:
		Before:
		After:
			Experiment report
			cell
			cell culture
			cell line
			tissue
		Added:
			Experiment report
			cell
			cell culture
			cell line
			tissue
		Removed:

	'related_standards' has been modified:
		Before:
			Vertebrate Trait Ontology
			Cell Ontology
			Experimental Factor Ontology
			FAANG metadata experiment specification standard
			Phenotypic QualiTy Ontology
			UBER anatomy ONtology
			NCBI Taxonomy
			BRENDA tissue / enzyme source
		After:
			Vertebrate Trait Ontology
			Cell Ontology
			Experimental Factor Ontology
			FAANG metadata experiment specification standard
			Phenotypic QualiTy Ontology
			UBER anatomy ONtology
			NCBI Taxonomy
			BRENDA tissue / enzyme source
			Minimum Information About a Microarray Experiment
			Minimal Information about a high throughput SEQuencing Experiment
		Added:
			Minimum Information About a Microarray Experiment
			Minimal Information about a high throughput SEQuencing Experiment
		Removed:

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.yedsf5' by 'peter' at 11:53, 19 Aug 2016 (approved):

	'homepage' has been modified:
		Before: https://github.com/FAANG/faang-metadata/blob/master/docs/faang_metadata_overview.md
		After: https://github.com/FAANG/faang-metadata/blob/master/docs/faang_sample_metadata.md

Support

General

support email	General Contact
support email	EBI General Contact

Additional Information

Contact

Peter Harrison ORCID

Tools

FAANG metadata validation service

https://data.faang.org/validation/samples

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Fort Lauderdale Principles

Applies to: Database software

FAANG Apache License

Publications

FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community.

Harrison PW,Fan J,Richardson D,Clarke L,Zerbino D,Cochrane G,Archibald AL,Schmidt CJ,Flicek P
Anim Genet 2018

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Terminology Artifacts

Models and Formats

FAANG metadata analysis specification

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (2)

BioSamples at the European Bioinformatics Institute
The BioSamples database aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI's assay databases such as ArrayExpress, the European Nucleotide Archive or PRIDE. It provides links to assays an specific samples, and accepts direct submissions of sample information.

NCBI BioSample
The BioSample database stores submitter-supplied descriptive information, or metadata, about the biological materials used in experimental assays, from which data stored in NCBI’s primary data archives are derived.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by peter ORCID

Funds

European Commission under FP7 Grant Agreement (Government body)

Maintains

Functional Annotation of Animal Genomes (FAANG) Administrators (Consortium) Lead

FAANG metadata sample specification standard

We need your help!

Developed by

Contact Us

About FAIRsharing