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Livestock Product Trait Ontology
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Created in 2016
How to cite this record FAIRsharing.org: LPT; Livestock Product Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.g78mbm; Last edited: Jan. 8, 2019, 1:35 p.m.; Last accessed: Nov 19 2019 1:30 a.m.
Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: Jan. 8, 2019, 1:35 p.m.
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The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes, in order to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features such as annotated genes.
Animal Trait Correlation Database
A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies
BovineMine integrates the bovine reference genome assembly with many other biological data sets, including genomes of other species. The sheep and goat genomes allow comparison across ruminants. Model organism data (human, mouse, rat) allow well-curated data sets to be applied to ruminants using orthology.
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