Soybean Ontology
Abbreviation: CO_336
Homepage http://www.cropontology.org/ontology/CO_336/Soybean
Countries that developed this resource United States
Created in 2015
Taxonomic range
Knowledge Domains
Subjects
User-defined Tags
How to cite this record FAIRsharing.org: CO_336; Soybean Ontology; DOI: https://doi.org/10.25504/FAIRsharing.j75srj; Last edited: Jan. 29, 2020, 2:49 p.m.; Last accessed: Jan 25 2021 12:55 a.m.
Record added: Jan. 18, 2018, 3:41 p.m.
Record updated:
Jan. 29, 2020, 2:49 p.m. by The FAIRsharing Team.
support email | Crop Ontology Helpdesk |
forum | Crop Ontology Forum |
help | Video Tutorials |
Additional Information
Contact | Elizabeth Arnaud ORCID |
No XSD schemas defined
Conditions of Use
Applies to: Data useData Curation
Annotation tool | http://www.cropontology.org/annotation-tool |
Add new terms | http://www.cropontology.org/add-ontology |
Data Access
Download OBO Format | http://www.cropontology.org/obo/CO_336 |
Download RDF | http://www.cropontology.org/ontology/CO_336/Soybean/nt |
Browse | http://www.cropontology.org/ontology/CO_336/Soybean |
Login | http://www.cropontology.org/ontology/CO_336/Soybean |
AgroPortal: Browse / Download | http://agroportal.lirmm.fr/ontologies/CO_336 |
REST Web Services
Crop Ontology API | http://www.cropontology.org/api |
No publications available
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally curated genetics, genomics and related data resources for soybean. SoyBase contains the most current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. The quantitative trait loci (QTL) represent more than 18 years of QTL mapping of more than 90 unique traits. SoyBase also contains the well-annotated 'Williams 82' genomic sequence and associated data mining tools. The genetic and sequence views of the soybean chromosomes and the extensive data on traits and phenotypes are extensively interlinked. This allows entry to the database using almost any kind of available information, such as genetic map symbols, soybean gene names or phenotypic traits. SoyBase is the repository for controlled vocabularies for soybean growth, development and trait terms, which are also linked to the more general plant ontologies.
Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
GWAS Atlas
The GWAS Atlas is a manually curated resource of genome-wide variant-trait associations for a wide range of species.
This record is not implemented by any policy.
Record Maintainer
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Funds
CGIAR, Montpellier, France (Government body)
Maintains
International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria (Research institute)
CGIAR Research Program on Grain Legumes (Consortium)