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Soybean Ontology

Abbreviation: CO_336

General Information

The Soybean Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information.

Homepage http://www.cropontology.org/ontology/CO_336/Soybean

Developed in Worldwide

Created in 2015

Taxonomic range

Glycine max

Knowledge Domains BETA

Subjects BETA

User-defined Tags

Data standards

Plant Phenotypes and Traits

How to cite this record FAIRsharing.org: CO_336; Soybean Ontology; DOI: https://doi.org/10.25504/FAIRsharing.j75srj; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 23 2019 1:46 a.m.

Record added: Jan. 18, 2018, 3:41 p.m.
Record updated: Sept. 5, 2018, 10:34 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.j75srj' by 'The FAIRsharing Team' at 10:34, 05 Sep 2018 (not approved):

	'domains' has been modified:
		Before:
			Agriculture
			Food
			Life Science
			Phenotype
			Plant Phenotypes and Traits
		After:
			Agriculture
			Data standards
			Food
			Life Science
			Phenotype
			Plant Phenotypes and Traits
		Added:
			Data standards
		Removed:

	'supportLinks' has been modified:
		Before:
			email|helpdesk@cropontology-curationtool.org
			forum|http://www.cropontology.org/feedback
			online documentation|http://agroportal.lirmm.fr/ontologies/CO_336
		After:
			email|helpdesk@cropontology-curationtool.org
			forum|http://www.cropontology.org/feedback
			help|http://www.cropontology.org/help
			online documentation|http://agroportal.lirmm.fr/ontologies/CO_336
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			help|http://www.cropontology.org/help
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	'miriam_id' has been modified:
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	'dataProcesses' has been modified:
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			Download OBO Format
			Download RDF
		After:
			Download OBO Format
			Download RDF
			Browse
			Login 
			Annotation tool
			Add new terms
		Added:
			Browse
			Login 
			Annotation tool
			Add new terms
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.j75srj' by 'The FAIRsharing Team' at 14:29, 25 Jan 2018 (approved):

	'dataProcesses' has been modified:
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		After:
			Download OBO Format
			Download RDF
		Added:
			Download OBO Format
			Download RDF
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.j75srj' by 'The FAIRsharing Team' at 14:03, 25 Jan 2018 (approved):

	'homepage' has been modified:
		Before: http://www.cropontology.org/rdf/
		After: http://www.cropontology.org/ontology/CO_336/Soybean

Support

General

support email	Crop Ontology Helpdesk
forum	Crop Ontology Forum
help	Video Tutorials
online documentation	Agroportal link

Additional Information

Contact

Elizabeth Arnaud

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Curation

Annotation tool	http://www.cropontology.org/annotation-tool
Add new terms	http://www.cropontology.org/add-ontology

Data Access

Download OBO Format	http://www.cropontology.org/obo/CO_336
Download RDF	http://www.cropontology.org/ontology/CO_336/Soybean/nt
Browse	http://www.cropontology.org/ontology/CO_336/Soybean
Login	http://www.cropontology.org/ontology/CO_336/Soybean

REST Web Services

Crop Ontology API

http://www.cropontology.org/api

Publications

No publications available

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Crop Ontology

Models and Formats

Web Ontology Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (2)

Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.

AgroPortal
The AgroPortal project reuses the biomedical domain’s semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities). The AgroPortal content is automatically retrieved by FAIRsharing.org (https://fairsharing.org/) and the Agrisemantics Map of Data Standards (http://vest.agrisemantics.org/).

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

CGIAR, Montpellier, France (Government body)

Maintains

International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria (Research institute)
CGIAR Research Program on Grain Legumes (Consortium)

Soybean Ontology

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