standards > terminology artifact > DOI:10.25504/FAIRsharing.j75srj


ready Soybean Ontology

Abbreviation: CO_336


General Information
The Soybean Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information.

Homepage http://www.cropontology.org/ontology/CO_336/Soybean

Countries that developed this resource United States

Created in 2015

Taxonomic range

Knowledge Domains 




How to cite this record FAIRsharing.org: CO_336; Soybean Ontology; DOI: https://doi.org/10.25504/FAIRsharing.j75srj; Last edited: Jan. 29, 2020, 2:49 p.m.; Last accessed: Feb 28 2020 6:31 p.m.


Record added: Jan. 18, 2018, 3:41 p.m.
Record updated: Jan. 29, 2020, 2:49 p.m. by The FAIRsharing Team.

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Support

General

support email Crop Ontology Helpdesk
forum Crop Ontology Forum
help Video Tutorials

Additional Information

Contact Elizabeth Arnaud   ORCID

Tools

    No tools defined


Schemas

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Related Standards

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Terminology Artifacts

Models and Formats

Identifier Schemas

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Implementing Databases (3)
SoyBase
SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally curated genetics, genomics and related data resources for soybean. SoyBase contains the most current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. The quantitative trait loci (QTL) represent more than 18 years of QTL mapping of more than 90 unique traits. SoyBase also contains the well-annotated 'Williams 82' genomic sequence and associated data mining tools. The genetic and sequence views of the soybean chromosomes and the extensive data on traits and phenotypes are extensively interlinked. This allows entry to the database using almost any kind of available information, such as genetic map symbols, soybean gene names or phenotypic traits. SoyBase is the repository for controlled vocabularies for soybean growth, development and trait terms, which are also linked to the more general plant ontologies.
Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
AgroPortal
The AgroPortal project reuses the biomedical domain’s semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities). The AgroPortal content is automatically retrieved by FAIRsharing.org (https://fairsharing.org/) and the Agrisemantics Map of Data Standards (http://vest.agrisemantics.org/).

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