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Record added: March 15, 2018, 10:07 a.m.
Record updated: March 9, 2020, 8:19 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/bsg-s001143' by 'The FAIRsharing Team' at 08:19, 09 Mar 2020 (approved): 'contactEmail' has been modified: Before: email@example.com After: firstname.lastname@example.org 'user_defined_tags' has been modified: Before: General purpose Structured data After: Data sharing General purpose Structured data Added: Data sharing Removed: 'contact' has been modified: Before: After: Tim Bray 'supportLinks' has been modified: Before: After: email@example.com online documentation|https://en.wikipedia.org/wiki/XML Added: firstname.lastname@example.org online documentation|https://en.wikipedia.org/wiki/XML Removed:
Edits to 'https://fairsharing.org/bsg-s001143' by 'The FAIRsharing Team' at 12:38, 26 Sep 2018 (approved): 'domains' has been modified: Before: Computer science After: Computer science General purpose Structured data Added: General purpose Structured data Removed: 'licences' has been modified: Before: W3C Document License|http://www.w3.org/Consortium/Legal/copyright-documents|Data After: W3C Document License|https://www.w3.org/Consortium/Legal/2015/doc-license|Data Added: W3C Document License|https://www.w3.org/Consortium/Legal/2015/doc-license|Data Removed: W3C Document License|http://www.w3.org/Consortium/Legal/copyright-documents|Data
Edits to 'https://fairsharing.org/bsg-s001143' by 'The FAIRsharing Team' at 10:10, 15 Mar 2018 (approved): 'shortname' has been modified: Before: Extensible Markup Language After: XML
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The Human Protein Atlas (HPA) portal is a publicly available database with millions of high-resolution images showing the spatial distribution of proteins in a number of different wild-type tissues, cancer types and human cell lines. The goal of the HPA is to map all the human proteins in cells, tissues and organs using an integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics and systems biology. The HPA is composed of six parts: the Tissue Atlas, the Single Cell Type Atlas, the Pathology Atlas, the Blood Atlas, the Brain Atlas, and the Cell Atlas.
The Global Proteome Machine Database
The Global Proteome Machine Database (gpmDB holds the minimum amount of information necessary for common bioinformatics-related tasks (such as sequence assignment validation) rather than being a complete record of a proteomics experiment. It was also created to aid in the process of validating peptide MS/MS spectra as well as protein coverage patterns. Most of the data is held in a set of XML files: the database serves as an index to those files, allowing for rapid lookups and reduced database storage requirements.
Database of Single Nucleotide Polymorphism
dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations.
Dryad is an open-source, community-led data curation, publishing, and preservation platform for CC0 publicly available research data. Dryad has a long-term data preservation strategy, and is a Core Trust Seal Certified Merritt repository with storage in US and EU at the San Diego Supercomputing Center, DANS, and Zenodo. While data is undergoing peer review, it is embargoed if the related journal requires / allows this. Dryad is an independent non-profit that works directly with: researchers to publish datasets utilising best practices for discovery and reuse; publishers to support the integration of data availability statements and data citations into their workflows; and institutions to enable scalable campus support for research data management best practices at low cost. Costs are covered by institutional, publisher, and funder members, otherwise a one-time fee of $120 for authors to cover cost of curation and preservation. Dryad also receives direct funder support through grants.
GWAS Central stores genome-wide association study data. The database content comprises direct submissions received from GWAS authors and consortia in addition to actively gathered data sets from various public sources. GWAS data are discoverable from the perspective of genetic markers, genes, genome regions or phenotypes, via graphical visualizations and detailed downloadable data reports.
Harvard Dataverse is a research data repository running on the open source web application Dataverse. Harvard Dataverse is fully open to the public, and allows upload and browsing of data from all fields of research, and is free for all researchers worldwide (up to 1 TB). Links to related grants, authors, software and research products are provided. Harvard Dataverse supports managed access (with an access request workflow) as well as embargoing generally and during peer review. Dataverse allows users to share, preserve, cite, explore, and analyse research data. It facilitates making data available to others, and allows you to replicate others' work more easily. Researchers, data authors, publishers, data distributors, and affiliated institutions all receive academic credit and web visibility. The Harvard Database receives support from Harvard University, public and private grants, and an emergent consortium model.
Mendeley Data is a multidisciplinary, free-to-use open repository specialized for research data. Data files of up to 10GB can be uploaded and shared. Search more than 20+ million datasets indexed from 1000s of data repositories and collect and share datasets with the research community following the FAIR data principles. Links are available to related authors, software, grants and research. Each version of a dataset is given a unique DOI, and dark archived with DANS (Data Archiving and Networking Services), ensuring that every dataset and citation will be valid in perpetuity. Metadata is licensed CC0, and datasets are and will continue to be free access. Mendeley Data will shortly support managed access, and currently supports embargoing of data both generally and while undergoing peer review. It is funded by a subscription model for Academic & Government entities.
Global Information System of the International Treaty on Plant Genetic Resources for Food and Agriculture
GLIS is made available according to Art. 17 of the International Treaty to facilitate access and exchange, based on existing information systems, on scientific, technical and environmental matters related to plant genetic resources for food and agriculture. This service assigns Digital Object Identifiers (DOIs) to Plant Genetic Resources for Food and Agriculture (PGRFA) for reference in third party systems and scientific literature. Access to the system is free and open to anyone.
Forest Service Research Data Archive
A repository of published research data related to forest and grassland ecosystems. Primarily holds data sets created with U.S. Forest Service funding. Data sets are reviewed prior to publication, particularly their metadata; metadata are currently written to the Content Standard for Digital Geospatial Metadata - Biological Data Profile.
Imperial College Research Data Repository
A lightweight digital repository for data based on the concepts of collections of filesets. Both the collection and the fileset are assigned a DOI by the DataCite organisation which can be quoted in articles
NASA Socioeconomic Data and Applications Center
The Socioeconomic Data and Applications Center (SEDAC) is a regular member of the World Data System and focuses on human interactions in the environment. Its mission is to develop and operate applications that support the integration of socioeconomic and Earth science data and to serve as an "Information Gateway" between the Earth and social sciences. The SEDAC is one of the Earth Observing System Data and Information System (EOSDIS) Distributed Active Archive Centers (DAACs) that archive and distribute earth science data, managed by NASA's Earth Science Data and Information System Project (ESDIS), as part of the Earth Science Data Systems (ESDS) Program.
RESIF Seismic data portal
The RESIF Seismic data portal offers access to seismological and other associated geophysical data from permanent and temporary seismic networks operated all over the world by French research institutions and international partners, to support research on source processes and imaging of the Earth's interior at all scales. RESIF (French seismologic and geodetic network) is a French national equipment for the observation and understanding of the solid Earth.
International Standard Name Identifier Database
The International Standard Name Identifier (ISNI) Database is used to uniquely identify persons and organizations worldwide. ISNIs are assigned when there is a high level of confidence in matching new names to existing names in the database or when sufficiently rich metadata is available to determine that the new name does not yet exist in the ISNI database.
UNdata is an international statistical database providing search and download options for a variety of statistical resources compiled by the United Nations (UN) statistical system and other international agencies. The numerous databases or tables, collectively known as "datamarts", contain over 60 million data points and cover a wide range of statistical themes including agriculture, crime, communication, development assistance, education, energy, environment, finance, gender, health, labour market, manufacturing, national accounts, population and migration, science and technology, tourism, transport and trade.
Integrated Carbon Observation System Data Portal
ICOS Data Portal provides observational data and elaborated products on greenhouse gases. Data sets can be visualised and downloaded fully and/or partially. ICOS data meets the global standards for atmospheric, ecosystem flux and marine observations of greenhouse gases. All information on observations and the metadata is stored in persistent long-term repositories.
Leibniz Centre for Agricultural Landscape Research Open Research Data
The Leibniz Centre for Agricultural Landscape Research Open Research Data (ZALF Open Research Data) repository contains freely accessible primary research data primarily created at ZALF, although data from other institutions involved in landscape research may also be submitted. The portal provides free access to data and their descriptive metadata, including information about research context, instruments, methods, research areas and data management aspects. Data registered with this resource will be given a DOI. This resource provides data in the areas of climate change, food security, biodiversity conservation, resource scarcity, crop systems, and sustainability.
Bolin Centre Database
The Bolin Centre Database is a storage and management facility for data collected and collated at the Bolin Centre for Climate Research. Most of the data are available with open access and can be used under the terms given in the data description. The purpose of the center is to host all datasets produced within the Bolin Centre, to visualise the data and make the data publicly available.
Bicocca Open Archive Research Data
BOARD (Bicocca Open Archive Research Data) is the institutional data repository of the University of Milano-Bicocca. BOARD is an open, free-to-use research data repository, which enables members of University of Milano-Bicocca to make their research data publicly available. By depositing their research data in BOARD researchers can make their research data citable, share their data privately or publicly, ensure long-term storage for their data, keep access to all versions and link their article to their data.
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XML Core Working Group (Consortium)