standards > model/format > bsg-s001517
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ready AIRR Repertoire File Format

Abbreviation: AIRR Repertoire JSON


General Information
Increased interest in the immune system's involvement in pathophysiological phenomena coupled with decreased DNA sequencing costs have led to an explosion of antibody and T cell receptor sequencing data collectively termed "adaptive immune receptor repertoire sequencing" (AIRR-seq or Rep-Seq). The AIRR Community has been actively working to standardize protocols, metadata, formats, APIs, and other guidelines to promote open and reproducible studies of the immune repertoire. The AIRR Community Data Representation Working Group has developed standardized data representations for storing and sharing annotated antibody and T cell receptor data. The AIRR Repertoire JSON file format provides a mechanism to share AIRR Repertoire metadata between research projects.



Awaiting DOI assignment.

Publication for citation  The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons Christley S, Aguiar A, Blanck G, Breden F, Bukhari S, Busse C, Jaglale J, Harikrishnan S., Laserson U, Peters B, Rocha A, Schramm C., Taylor S, Vander Heiden J, Zimonja B, Watson C., Corrie B, Cowell L; Frontiers in Big Data ; 2020; 10.3389/fdata.2020.00022;


This record is maintained by bcorrie  ORCID

Record added: Aug. 7, 2020, 8 p.m.
Record updated: Aug. 14, 2020, 10:38 a.m. by The FAIRsharing Team.

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Publications

The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons

Christley S, Aguiar A, Blanck G, Breden F, Bukhari S, Busse C, Jaglale J, Harikrishnan S., Laserson U, Peters B, Rocha A, Schramm C., Taylor S, Vander Heiden J, Zimonja B, Watson C., Corrie B, Cowell L
Frontiers in Big Data 2020

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Related Databases (2)
iReceptor Public Archive
A data repository for the storage and sharing of Adaptive Immune Receptor Repertoire data. Primary public repository for the iReceptor Platform and Scientific Gateway.

VDJServer
VDJServer is a free, scalable resource for performing immune repertoire analysis and sharing data.

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