standards > model/format > bsg-s001587


ready proteomics BAM

Abbreviation: proBAM


General Information
The proteomics BAM (proBAM) file format is designed for storing and analyzing peptide spectrum matches (PSMs) within the context of the genome. proBAM is built upon the SAM format and its compressed binary version, BAM, with necessary modifications to accommodate information specific to proteomics data such as PSM scores and confidence, charge states and peptide level modifications, both artefactual and PTMs (post-translational modifications).



Awaiting DOI assignment.

Publication for citation  The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. Menschaert G,Wang X,Jones AR,Ghali F,Fenyo D,Olexiouk V,Zhang B,Deutsch EW,Ternent T,Vizcaino JA; Genome Biol ; 2018; 10.1186/s13059-017-1377-x;


Record added: Jan. 31, 2021, 8:16 p.m.
Record updated: Jan. 31, 2021, 8:16 p.m. by The FAIRsharing Team.





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The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.

Menschaert G,Wang X,Jones AR,Ghali F,Fenyo D,Olexiouk V,Zhang B,Deutsch EW,Ternent T,Vizcaino JA
Genome Biol 2018

View Paper (PubMed) View Publication

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