Proteomics Standards Initiative Extended Fasta Format
Abbreviation: PEFF
Homepage http://psidev.info/peff
Countries that developed this resource Worldwide
Created in 2019
Taxonomic range
Knowledge Domains
Subjects
Awaiting DOI assignment.
Publication for citation Proteomics Standards Initiative Extended FASTA Format. Binz PA,Shofstahl J,Vizcaino JA,Barsnes H,Chalkley RJ,Menschaert G,Alpi E,Clauser K,Eng JK,Lane L,Seymour SL,Sanchez LFH,Mayer G,Eisenacher M,Perez-Riverol Y,Kapp EA,Mendoza L,Baker PR,Collins A,Van Den Bossche T,Deutsch EW; J Proteome Res ; 2019; 10.1021/acs.jproteome.9b00064;
Record added: Jan. 31, 2021, 8:37 p.m.
Record updated:
Jan. 31, 2021, 8:37 p.m. by The FAIRsharing Team.
Tools Consuming PEFF | http://psidev.info/peff |
No XSD schemas defined
Conditions of Use
Applies to: Data useData Release
Download Specification | https://github.com/HUPO-PSI/PEFF/tree/master/Specification |
Data Access
Validate Format | http://www.peptideatlas.org/PSI/PEFF/validator.html |
Proteomics Standards Initiative Extended FASTA Format.
Binz PA,Shofstahl J,Vizcaino JA,Barsnes H,Chalkley RJ,Menschaert G,Alpi E,Clauser K,Eng JK,Lane L,Seymour SL,Sanchez LFH,Mayer G,Eisenacher M,Perez-Riverol Y,Kapp EA,Mendoza L,Baker PR,Collins A,Van Den Bossche T,Deutsch EW
J Proteome Res 2019
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
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The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The UniProt Knowledgebase consists of two sections: a reviewed section containing manually-annotated records with information extracted from literature and curator-evaluated computational analysis (aka "UniProtKB/Swiss-Prot"), and an unreviewed section with computationally analyzed records that await full manual annotation (aka "UniProtKB/TrEMBL").
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Maintains
HUPO-PSI initiative; Proteomics informatics working group (Consortium) Lead