Portable reduced-precision binary format for trajectories produced by GROMACS package.
Created in 1995
No XSD schemas defined
Conditions of Use
Methods and Techniques in Computational Chemistry: METECC-95
D. Green, K. Meacham, M. Surridge, F. van Hoesel and J. Berendsen
Methods and Techniques in Computational Chemistry: METECC-95 1995
No guidelines defined
No semantic standards defined
Models and Formats
No syntax standards defined
No identifier schema standards defined
No metrics standards defined
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing.
This record is not implemented by any policy.