How to cite this record: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: March 8, 2018, 11:35 a.m.; Last accessed: Apr 20 2018 7:40 a.m.
|online documentation||http://genesys.cgxchange.org/gcp-crop-on ...|
|Contact||Elizabeth Arnaud ORCID|
No XSD schemas defined
Conditions of UseApplies to: Data use
|Add New Terms||http://www.cropontology.org/add-ontology|
|Personal Annotation Tool||http://www.cropontology.org/annotation-tool|
Other Web Services
Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature.
Shrestha R,Arnaud E,Mauleon R,Senger M,Davenport GF,Hancock D,Morrison N,Bruskiewich R,McLaren G
AoB Plants 2010
View in BioPortal.
Models and Formats
No syntax standards defined
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.
Musa Germplasm Information System
The Musa Germplasm Information System (MGIS) contains key information on Musa germplasm diversity, including passport data, botanical classification, morpho-taxonomic descriptors, molecular studies, plant photographs and GIS information on 4771 accessions managed in 24 collections around the world, making it the most extensive source of information on banana genetic resources.
The Triticeae Toolbox
The Triticeae Toolbox (T3) is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project (Wheat CAP). Funding is provided by the National Institute for Food and Agriculture (NIFA) and the United States Department of Agriculture (USDA). The current project is funded through NIFA's International Wheat Yield Partnership (IWYP) and part of the Agriculture and Food Research Initiative (AFRI).
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
Large-scale genomic data for peanut have only become available in the last few years, with the advent of low-cost sequencing technologies. To make the data accessible to researchers and to integrate across diverse types of data, the International Peanut Genomics Consortium funded the development of PeanutBase. This database provides access to genetic maps and markers, locations of quantitative trait loci (QTLs), genome sequences, gene locations and sequences, gene families and correspondences with genes in other species, and descriptions of traits and growth characteristics. It also provides tools for exploration and analysis, including sequence of genomic and genic sequences, and keyword searches of genes, gene families, and QTL studies. These resources should facilitate breeding advancements in peanut, helping improve crop productivity and there are a variety of resources for peanut research around the web, ranging from tools for basic plant biology to information for growers and various sectors of the peanut industry to resources for plant breeders.
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This record is maintained by ElizabethArnaud
#1340112 (US National Science Foundation (NSF))