standards > terminology artifact > DOI:10.25504/FAIRsharing.wgfrmg


ready Crop Ontology

Abbreviation: CO


General Information
The Crop Ontology project is a service of the Integrated Breeding Platform to harmonize the traits measured by breeders. Crop Ontology provides trait names and standard variables that annotate precisely the trait observation made. CO is to be used from data capture with fieldbooks to storing data files in databases and repositories.

Homepage http://www.cropontology.org/

Developed in France

Created in 2007

Taxonomic range

Knowledge Domains  BETA




How to cite this record FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 15, 2019, 1:27 p.m.; Last accessed: Feb 22 2019 2:18 a.m.


This record is maintained by ElizabethArnaud

Record updated: Sept. 4, 2018, 11:17 a.m. by The FAIRsharing Team.

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In Collections
Wheat Data Interoperability Guidelines


Support

General

blog Latest news
support email helpdesk@cropontology-curationtool.org
forum Forum
help Video Tutorials
online documentation About
online documentation http://genesys.cgxchange.org/gcp-crop-on ...
online documentation Guidelines

Additional Information

Contact Elizabeth Arnaud   ORCID

External Links

Bioportal http://bioportal.bioontology.org/ontologies/CO

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

Add New Terms http://www.cropontology.org/add-ontology
Personal Annotation Tool http://www.cropontology.org/annotation-tool
Download template http://www.cropontology.org/TD_template_v5.xls

Data Access

Login http://www.cropontology.org/
search http://www.cropontology.org/

Other Web Services

JSON api http://www.cropontology.org/api


Publications

Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature.

Shrestha R,Arnaud E,Mauleon R,Senger M,Davenport GF,Hancock D,Morrison N,Bruskiewich R,McLaren G
AoB Plants 2010

View Paper (PubMed) View Publication

Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice.

Shrestha R,Matteis L,Skofic M,Portugal A,McLaren G,Hyman G,Arnaud E
Front Physiol 2012

View Paper (PubMed) View Publication

CO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.



Implementing Databases (5)
Genetic and Genomic Information System
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.
Musa Germplasm Information System
The Musa Germplasm Information System (MGIS) contains key information on Musa germplasm diversity, including passport data, botanical classification, morpho-taxonomic descriptors, molecular studies, plant photographs and GIS information on 4771 accessions managed in 24 collections around the world, making it the most extensive source of information on banana genetic resources.
The Triticeae Toolbox
The Triticeae Toolbox (T3) is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project (Wheat CAP). Funding is provided by the National Institute for Food and Agriculture (NIFA) and the United States Department of Agriculture (USDA). The current project is funded through NIFA's International Wheat Yield Partnership (IWYP) and part of the Agriculture and Food Research Initiative (AFRI).
Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
PeanutBase
Large-scale genomic data for the peanut have only become available in the last few years, with the advent of low-cost sequencing technologies. To make the data accessible to researchers and to integrate across diverse types of data, the International Peanut Genomics Consortium funded the development of PeanutBase. This database provides access to genetic maps and markers, locations of quantitative trait loci (QTLs), genome sequences, gene locations and sequences, gene families and correspondences with genes in other species, and descriptions of traits and growth characteristics. It also provides tools for exploration and analysis, including sequence of genomic and genic sequences, and keyword searches of genes, gene families, and QTL studies. These resources should facilitate breeding advancements in peanut, helping improve crop productivity and there are a variety of resources for peanut research around the web, ranging from tools for basic plant biology to information for growers and various sectors of the peanut industry to resources for plant breeders.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Grant Number(s)

  • #1340112 (National Science Foundation (NSF), USA)