standards > terminology artifact > DOI:10.25504/FAIRsharing.pbbnwa


ready Orphanet Rare Diseases Ontology

Abbreviation: ORDO


General Information
Orphanet Rare Diseases Ontology (ORDO) provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.

Homepage http://www.orphadata.org/cgi-bin/inc/ordo_orphanet.inc.php

Developed in European Union , France

Created in 2012

Taxonomic range




How to cite this record FAIRsharing.org: ORDO; Orphanet Rare Diseases Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pbbnwa; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 22 2019 1:41 a.m.


This record is maintained by CharlotteRodwell

Record updated: July 11, 2017, 10:44 a.m. by The FAIRsharing Team.

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Support

General

Mailing List ORDO users mailing list
online documentation Information and release notes

Additional Information

Contact Ana Rath

External Links

Bioportal http://bioportal.bioontology.org/ontologies/ORDO
OBO http://obofoundry.org/ontology/ordo.html

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use




Publications

Rare diseases knowledge management: the contribution of proximity measurements in OntoOrpha and OMIM.

Aime X,Charlet J,Furst F,Kuntz P,Trichet F,Dhombres F
Stud Health Technol Inform 2012

View Paper (PubMed)

ORDO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.



Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (2)
Orphanet
Orphanet is the reference resource for information on rare diseases and orphan drugs for all publics. Its aim is to contribute to the improvement of the diagnosis, care and treatment of patients with rare diseases. Orphanet maintains the Orphanet nomenclature, essential for interoperability, and the Orphanet Rare Disease Ontology (ORDO).
DisGeNET: a database of gene-disease associations
DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version (v4.0) contains 429,036 associations, between 17,381 genes and 15,093 diseases, disorders and clinical or abnormal human phenotypes, and 72,870 variant-disease associations between 46,589 SNPs and 6,356 diseases and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages, and an R package.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

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