Name: FAIRsharing record for: Advanced Genetics
Published: 2019-02-28 16:59:32
License: https://creativecommons.org/licenses/by-sa/4.0/. Please link to https://fairsharing.org and https://fairsharing.org/static/img/home/svg/FAIRsharing-logo.svg for attribution.

Recommendation

Advanced Genetics

Standards and databases currently recommended in the Advanced Genetics Author Guidelines

This record is maintained by: MylesAxton ORCID

This recommendation is taken from the following policy:

Advanced Genetics.

Record added: Feb. 28, 2019, 4:59 p.m..
Record updated: July 16, 2020, 9:23 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 13:46, 18 Apr 2019 (approved):

	'reference_url' has been modified:
		Before: https://onlinelibrary.wiley.com/journal/26416573/homepage/forauthors.html
		After: https://onlinelibrary.wiley.com/page/journal/26416573/homepage/author-guidelines

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 15:43, 18 Apr 2019 (approved):

	'standards' has been modified:
		Before:
		After:
			FORCE11 Data Citation Principles
		Added:
			FORCE11 Data Citation Principles
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 15:49, 18 Apr 2019 (approved):

	'standards' has been modified:
		Before:
			FORCE11 Data Citation Principles
		After:
			CellML
			Environment Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			Investigation Study Assay Tabular
			Experimental Factor Ontology
			mz Markup Language
			Human Phenotype Ontology
			PSI Molecular Interaction Controlled Vocabulary
			Minimal Information Required In the Annotation of Models
			Units Ontology
			BioAssay Ontology
			eagle-i Research Resource Ontology
			DataCite Metadata Schema
			Systems Biology Markup Language
			FORCE11 Data Citation Principles
			ThermoML
			Research Resource Identifiers
		Added:
			CellML
			Environment Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			Investigation Study Assay Tabular
			Experimental Factor Ontology
			mz Markup Language
			Human Phenotype Ontology
			PSI Molecular Interaction Controlled Vocabulary
			Minimal Information Required In the Annotation of Models
			Units Ontology
			BioAssay Ontology
			eagle-i Research Resource Ontology
			DataCite Metadata Schema
			Systems Biology Markup Language
			ThermoML
			Research Resource Identifiers
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 15:56, 18 Apr 2019 (approved):

	'databases' has been modified:
		Before:
		After:
			GenBank
			ChEMBL
			FlyBase
			The Arabidopsis Information Resource
			WormBase
			MetaboLights
			ArrayExpress
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			HUGO Gene Nomenclature Committee
			Eukaryotic Pathogen Database Resources
			Rat Genome Database
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			NCBI Probe Database
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Sequence Read Archive
			NCBI Gene
			NCBI Viral genomes
			PubChem
			Database of Genotypes and Phenotypes
			Database of genomic structural VARiation
			UniProt Knowledgebase
			Xenopus laevis and tropicalis biology and genomics resource
			The Zebrafish Information Network
			Database of Genomic Variants Archive
			NCBI Trace Archives
			Open Science Framework
			MGI Mouse Gene Expression Database
			NCBI BioProject
			NCBI BioSample
			Online Mendelian Inheritance in Man
			Japanese Genotype-phenotype Archive
			Synapse
			Zenodo
			Allele Frequency Net Database
			Leiden Open Variation Database
			FAIRsharing
			Ag Data Commons
		Added:
			GenBank
			ChEMBL
			FlyBase
			The Arabidopsis Information Resource
			WormBase
			MetaboLights
			ArrayExpress
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			HUGO Gene Nomenclature Committee
			Eukaryotic Pathogen Database Resources
			Rat Genome Database
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			NCBI Probe Database
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Sequence Read Archive
			NCBI Gene
			NCBI Viral genomes
			PubChem
			Database of Genotypes and Phenotypes
			Database of genomic structural VARiation
			UniProt Knowledgebase
			Xenopus laevis and tropicalis biology and genomics resource
			The Zebrafish Information Network
			Database of Genomic Variants Archive
			NCBI Trace Archives
			Open Science Framework
			MGI Mouse Gene Expression Database
			NCBI BioProject
			NCBI BioSample
			Online Mendelian Inheritance in Man
			Japanese Genotype-phenotype Archive
			Synapse
			Zenodo
			Allele Frequency Net Database
			Leiden Open Variation Database
			FAIRsharing
			Ag Data Commons
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 16:06, 18 Apr 2019 (approved):

	'databases' has been modified:
		Before:
			GenBank
			ChEMBL
			FlyBase
			The Arabidopsis Information Resource
			WormBase
			MetaboLights
			ArrayExpress
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			HUGO Gene Nomenclature Committee
			Eukaryotic Pathogen Database Resources
			Rat Genome Database
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			NCBI Probe Database
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Sequence Read Archive
			NCBI Gene
			NCBI Viral genomes
			PubChem
			Database of Genotypes and Phenotypes
			Database of genomic structural VARiation
			UniProt Knowledgebase
			Xenopus laevis and tropicalis biology and genomics resource
			The Zebrafish Information Network
			Database of Genomic Variants Archive
			NCBI Trace Archives
			Open Science Framework
			MGI Mouse Gene Expression Database
			NCBI BioProject
			NCBI BioSample
			Online Mendelian Inheritance in Man
			Japanese Genotype-phenotype Archive
			Synapse
			Zenodo
			Allele Frequency Net Database
			Leiden Open Variation Database
			FAIRsharing
			Ag Data Commons
		After:
			GenBank
			ChEMBL
			FlyBase
			The Arabidopsis Information Resource
			WormBase
			MetaboLights
			ArrayExpress
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			HUGO Gene Nomenclature Committee
			Eukaryotic Pathogen Database Resources
			Rat Genome Database
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			NCBI Probe Database
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Sequence Read Archive
			NCBI Gene
			NCBI Viral genomes
			PubChem
			Database of Genotypes and Phenotypes
			Database of genomic structural VARiation
			UniProt Knowledgebase
			Xenopus laevis and tropicalis biology and genomics resource
			The Zebrafish Information Network
			Database of Genomic Variants Archive
			NCBI Trace Archives
			Open Science Framework
			MGI Mouse Gene Expression Database
			NCBI BioProject
			NCBI BioSample
			ClinVar
			Online Mendelian Inheritance in Man
			Japanese Genotype-phenotype Archive
			Synapse
			Zenodo
			Allele Frequency Net Database
			Leiden Open Variation Database
			FAIRsharing
			Ag Data Commons
		Added:
			ClinVar
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 16:03, 18 Apr 2019 (approved):

	'standards' has been modified:
		Before:
			CellML
			Environment Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			Investigation Study Assay Tabular
			Experimental Factor Ontology
			mz Markup Language
			Human Phenotype Ontology
			PSI Molecular Interaction Controlled Vocabulary
			Minimal Information Required In the Annotation of Models
			Units Ontology
			BioAssay Ontology
			eagle-i Research Resource Ontology
			DataCite Metadata Schema
			Systems Biology Markup Language
			FORCE11 Data Citation Principles
			ThermoML
			Research Resource Identifiers
		After:
			CellML
			Environment Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			Investigation Study Assay Tabular
			Experimental Factor Ontology
			NCI Thesaurus
			mz Markup Language
			Human Phenotype Ontology
			PSI Molecular Interaction Controlled Vocabulary
			Minimal Information Required In the Annotation of Models
			Units Ontology
			BioAssay Ontology
			eagle-i Research Resource Ontology
			DataCite Metadata Schema
			Systems Biology Markup Language
			FORCE11 Data Citation Principles
			The Data Use Ontology
			ThermoML
			Research Resource Identifiers
			FAIR Metrics - Machine-readability of metadata
			FAIR Metrics - Accessible Usage License
			FAIR Metrics -  Detailed Provenance
			FAIR Metrics -  Meets Community Standards
		Added:
			NCI Thesaurus
			The Data Use Ontology
			FAIR Metrics - Machine-readability of metadata
			FAIR Metrics - Accessible Usage License
			FAIR Metrics -  Detailed Provenance
			FAIR Metrics -  Meets Community Standards
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'The FAIRsharing Team' at 16:54, 25 Apr 2019 (approved):

	'recommendation' has been modified:
		Before: False
		After: True

Edits to 'https://fairsharing.org/bsg-c000058' by 'The FAIRsharing Team' at 21:23, 16 Jul 2020 (approved):

	'name' has been modified:
		Before: Genetics & Genomics Next
		After: Advanced Genetics

	'onto_disciplines' has been modified:
		Before:
			Biomedical Science
			Epigenomics
			Functional Genomics
			Genetics
			Genomics
			Life Science
		After:
		Added:
		Removed:
			Biomedical Science
			Epigenomics
			Functional Genomics
			Genetics
			Genomics
			Life Science

	'onto_domains' has been modified:
		Before:
			Experiment report
			Knowledge representation role
			biological_process
		After:
		Added:
		Removed:
			Experiment report
			Knowledge representation role
			biological_process

	'link_name' has been modified:
		Before: GeneticsGenomicsNext
		After: AdvancedGenetics

	'taxonomies' has been modified:
		Before:
			All
		After:
		Added:
		Removed:
			All

	'description' has been modified:
		Before: Standards and databases currently recommended in the GGN Author Guidelines
		After: Standards and databases currently recommended in the Advanced Genetics Author Guidelines

Showing records 1 - 50 of 65.

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Ag Data Commons	Ag Data Commons	Database	Agricultural Engineering Agriculture Agroecology Agronomy Animal Husbandry Plus 19 more...	Agricultural products Agroecosystem Bioenergy Geographical location Legal regulation Plus 7 more...	All Animalia Archaea Bacteria Chromista Plus 4 more...	ITIS	DataCite Metadata Schema RDF FORCE11 DC Schema.org DC Plus 4 more...	Advanced Genetics SciData Data Policy	AgBioData Advanced Genetics
Allele Frequency Net Database	AFND	Database	Biomedical Science Genetics Life Science	Allele Allele frequency Deoxyribonucleic acid Genotype	Not applicable	None	None	Elsevier's Data Policy Cell Press - Cell Metabolism - Information for Authors Advanced Genetics Cell Press - Neuron - Information for Authors Cell Press - Molecular Cell - Information for Authors Plus 6 more...	Advanced Genetics
ArrayExpress	ArrayExpress	Database	Functional Genomics	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Experiment metadata Gene expression data Plus 5 more...	All	BioSD Expression Atlas Bgee ENA GEO Plus 12 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 3 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 51 more...	Data Citation Implementation DNA Microarray EOSC-Life ELIXIR Core Data Resources and Deposition Databases Advanced Genetics Plus 1 more...
BioAssay Ontology	BAO	Standard	Biochemistry Biomedical Science Life Science Ontology and Terminology	Assay Biological process Cell Chemical entity Molecular entity Plus 3 more...	All	ChEMBL PubChem LINCS Data Portal RegenBase	CL PATO UO CLO SIO Plus 3 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack Advanced Genetics
CellML	CellML	Standard	Life Science Physiology	Mathematical model Cell	All	BioModels KiMoSys PMR	SED-ML MIRIAM RDF FieldML MathML Plus 4 more...	EMBO Recommended Databases and Data Standards Advanced Genetics	Computational Modeling (COMBINE) Computational Modeling FAIRDOM Community Standards The NormSys Registry for Modeling Standards Advanced Genetics Plus 1 more...
ChEMBL	ChEMBL	Database	Biochemistry Drug Discovery Medicinal Chemistry	Chemical structure Bioactivity Drug Small molecule	All	BindingDB GPCRDB Guide to Pharmacology PubChem Cellosaurus Plus 9 more...	ChEBI BTO CHEMINF UO BAO Plus 5 more...	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 4 more...	Toxicology Data Citation Implementation Bioschemas EOSC-Life ELIXIR Core Data Resources and Deposition Databases Plus 1 more...
ClinVar	ClinVar	Database	Biomedical Science Clinical Studies Genomics Preclinical Studies	Genetic polymorphism Disease	Homo sapiens	ArrayExpress dbSNP dbVar EVA eDGAR Plus 4 more...	SNOMEDCT VCF HP HGNC SO	Advanced Genetics	RDA Covid-19 WG Resources Advanced Genetics
Database of genomic structural VARiation	dbVar	Database	Biomedical Science Life Science	Genetic polymorphism Genome	All	DGVa ClinVar DGV BovineMine	VarioML	Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Cold Spring Harbor Lab Press - Genome Research Plus 37 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics
~~Database of Genomic Variants Archive~~	~~DGVa~~	Database	Genomics	Genetic polymorphism Curated information Structure Sequence variant	All	ArrayExpress ENA EGA Ensembl dbVar Plus 2 more...	None	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Springer Nature - Research Data Policies HRB Open Research Plus 25 more...	Data Citation Implementation Advanced Genetics
Database of Genotypes and Phenotypes	dbGaP	Database	Biomedical Science Epigenetics Life Science	Gene expression data Genetic polymorphism Genotype Phenotype	Homo sapiens	GWAS Central ImmPort BioSample NSRR exRNA Atlas Plus 1 more...	VCF SRA-XML DUO	NIH GWAS Sharing Policy IH Policy on sharing of model organisms for Biomedical Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 39 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics RDA Covid-19 WG Resources
Database of Single Nucleotide Polymorphism	dbSNP	Database	Life Science	Genetic polymorphism Single nucleotide polymorphism Genome	Homo sapiens	PolymiRTS T1DBase GWAS Central EVA ClinVar Plus 5 more...	JSON XML	NIH GWAS Sharing Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Plus 38 more...	NIH-supported data repositories Data Citation Implementation National Child Development Study (UK) Open Science Prize Advanced Genetics
DataCite Metadata Schema	DataCite Metadata Schema	Standard	Life Science	Annotation Data retrieval Resource metadata Centrally registered identifier	All	figshare Dryad PANGAEA OSF Seanoe Plus 38 more...	Common Metadata Elements for Cataloging Biomedical Datasets DCTERMS OpenAIRE Guidelines for Data Archives ECRIN MDR schema EngMeta	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 3 more...	Advanced Genetics bioCADDIE
eagle-i Research Resource Ontology	ERO	Standard	Biomedical Science Life Science Ontology and Terminology	Biological sample Protocol Reagent Study design	All	OBO	UBERON BRO OBI IAO VIVO-ISF Plus 1 more...	Advanced Genetics SciData Data Policy	Advanced Genetics Cell Migration Standardisation Organisation
Environment Ontology	ENVO	Standard	Ecology Environmental Science Epidemiology Life Science Nutritional Science Plus 1 more...	Environmental material Marine metagenome Microbiome	Algae Archaea Bacteria Eukaryota Fungi Plus 3 more...	GOLD Gramene MCDRP OBO MeRy-B Plus 2 more...	ChEBI OBO_REL PATO NCBITAXON MIxS - MIMARKS Plus 10 more...	Advanced Genetics SciData Data Policy	Toxicology Advanced Genetics Systems Medicine RDA Covid-19 WG Resources
Eukaryotic Pathogen Database Resources	EuPathDB	Database	Biomedical Science Life Science	Genome Orthologous Pathogen	Anncaliia Babesia Crithidia Cryptosporidium Edhazardia Plus 19 more...	FungiDB CryptoDB GiardiaDB MicrosporidiaDB PlasmoDB Plus 5 more...	FASTA GFF3 OBI	PLOS Recommended Repositories Advanced Genetics eLife Data Policy SciData Data Policy	NIH-supported data repositories Data Citation Implementation Open Science Prize EOSC-Life ELIXIR UK node resources Plus 1 more...
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Functional Genomics Genomics Plus 2 more...	Annotation DNA sequence data Genomic assembly Sequence annotation Data storage Plus 6 more...	All	GenBank BioSD DDBJ ArrayExpress Europe PMC Plus 14 more...	SRA-XML NCBITAXON MIASPPE ENA Sequence Flat File Format FASTA Plus 6 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 59 more...	Data Citation Implementation EOSC-Life ELIXIR Core Data Resources and Deposition Databases Advanced Genetics RDA Covid-19 WG Resources
Experimental Factor Ontology	EFO	Standard	Functional Genomics Ontology and Terminology	Experiment metadata Experimental measurement Assay Independent variable	All	BioSD Expression Atlas SCDE ArrayExpress GWAS Central Plus 11 more...	ChEBI CL NEMO CCONT FAANG metadata sample specification standard Plus 4 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack Advanced Genetics RDA Covid-19 WG Resources
FAIR Metrics - Accessible Usage License	FM-R1.1	Standard	Data Governance	FAIR Resource metadata Digital curation	Not applicable	None	FAIR	Advanced Genetics	Advanced Genetics
FAIR Metrics - Detailed Provenance	FM-R1.2	Standard	Data Governance	Data identity and mapping FAIR Resource metadata Digital curation	Not applicable	None	FAIR	Advanced Genetics	Advanced Genetics
FAIR Metrics - Machine-readability of metadata	FM-F2	Standard	Data Governance	Data identity and mapping FAIR Resource metadata Digital curation	Not applicable	None	FAIR	Advanced Genetics	Advanced Genetics
FAIR Metrics - Meets Community Standards	FM-R1.3	Standard	Data Governance	Data identity and mapping FAIR Digital curation	Not applicable	None	FAIR	Advanced Genetics	Advanced Genetics
FAIRsharing	FAIRsharing	Database	Agriculture Biomedical Science Earth Science Environmental Science Humanities Plus 2 more...	FAIR	All	None	Schema.org BioDBCore Bioschemas SRAO DOI Plus 2 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 13 more...	Bioschemas EOSC-Life ELIXIR Recommended Interoperability Resources ELIXIR UK node resources Advanced Genetics
FlyBase	FlyBase	Database	Anatomy Bioinformatics Comparative Genomics Data Submission, Annotation and Curation Functional Genomics Plus 5 more...	Bibliography Biocuration CRISPR Citation Clone library Plus 27 more...	Drosophila Drosophila ananassae Drosophila erecta Drosophila grimshawi Drosophila melanogaster Plus 8 more...	DRSC-FGR NONCODE SGD WormBase GenomeRNAi Plus 16 more...	FBbi FB-DV SO ECO FBsp Plus 12 more...	Elsevier's Data Policy PLOS Recommended Repositories Rockefeller University Press - Journal Of Cell Biology - Data Deposition Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council Advanced Genetics Plus 4 more...	NIH-supported data repositories Open Science Prize Advanced Genetics
FORCE11 Data Citation Principles	FORCE11 DC	Standard	Life Science	Citation	All	Zenodo Ag Data Commons Imperial College Research Data Repository DataStream	Reporting guidelines for research resources Compact Identifier Format	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 7 more...	Advanced Genetics
GenBank	GenBank	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Epidemiology Functional Genomics Plus 4 more...	Annotation DNA sequence data Genomic assembly Nucleic acid sequence Data storage Plus 9 more...	All	DDBJ IMG/M NONCODE GENI-ACT GOLD Plus 12 more...	SRA-XML NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 64 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics COVID-19 Resources Plus 1 more...
Gene Expression Omnibus	GEO	Database	Epidemiology Life Science Virology	DNA microarray Gene expression data Genome	All	NONCODE Nematode.net Bgee ArrayExpress SMD Plus 21 more...	MIAME/Env MIAME MINiML SOFT FAANG metadata experiment specification standard	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 61 more...	NIH-supported data repositories Data Citation Implementation DNA Microarray Open Science Prize Advanced Genetics Plus 3 more...
HUGO Gene Nomenclature Committee	HGNC	Database	Life Science Ontology and Terminology	Gene name Gene	Homo sapiens	FlyBase STRING HPRD MGDD CRC Atlas Plus 11 more...	HGNC VGNC	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 6 more...	Data Citation Implementation Advanced Genetics
Human Phenotype Ontology	HP	Standard	Biomedical Science Genetics Ontology and Terminology Phenomics Preclinical Studies	Disease Phenotype	Homo sapiens	GWASdb MGI Orphanet GWAS Central DisGeNET Plus 10 more...	MP DOID ORDO BDO GVF Guidelines Plus 7 more...	Advanced Genetics	Cell Migration Standardisation Organisation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack Advanced Genetics Systems Medicine Plus 1 more...
Investigation Study Assay Tabular	ISA-Tab	Standard	Functional Genomics Life Science	Biological sample DNA microarray Experiment metadata Gene expression data Report Plus 3 more...	All	SCDE MTBLS GMD GigaDB SCC Plus 8 more...	CL OBI ECO BTO RNAO Plus 20 more...	EMBO Recommended Databases and Data Standards Advanced Genetics BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project FAIRDOM Community Standards bioCADDIE eTRIKS Standards Starter Pack Plus 7 more...
Japanese Genotype-phenotype Archive	JGA	Database	Biomedical Science Epigenetics Life Science	Gene expression data Genetic polymorphism Genotype Phenotype	Homo sapiens	DDBJ	SRA-XML VCF	Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 2 (for life sciences) Springer Nature Research Data Policy Type 2 Plus 4 more...	RDA Covid-19 WG Resources Advanced Genetics
Leiden Open Variation Database	LOVD	Database	Biomedical Science Human Genetics Life Science	Genetic polymorphism Deoxyribonucleic acid Sequence variant	Homo sapiens	EVA	None	Elsevier's Data Policy Cell Press - Cell Metabolism - Information for Authors Advanced Genetics Cell Press - Molecular Cell - Information for Authors Elsevier - The Lancet - Information for Authors Plus 6 more...	Advanced Genetics
MetaboLights	MTBLS	Database	Data Submission, Annotation and Curation Metabolomics Structural Biology	Biocuration Biological sample Chemical formula Chemical structure Mass spectrometry spectra Plus 9 more...	All	Rhea WikiPathways BRENDA OmicsDI DES-TOMATO	nmrCV ChEBI ISA-Tab PSI-MS CV BTO Plus 3 more...	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 18 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project EOSC-Life ELIXIR Core Data Resources and Deposition Databases Plus 2 more...
MGI Mouse Gene Expression Database	GXD	Database	Life Science	Gene expression data Genome	Mus musculus	MGI MouseMine	MA EMAP ATOL	PLOS Recommended Repositories Advanced Genetics eLife Data Policy	RDA Covid-19 WG Resources Advanced Genetics
MIAME Notation in Markup Language	MINiML	Standard	Functional Genomics Life Science	DNA microarray Gene expression data Report Assay	All	GEO SMIR	MIAME XML	Advanced Genetics BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	DNA Microarray bioCADDIE Advanced Genetics RDA Covid-19 WG Resources
Minimal Information Required In the Annotation of Models	MIRIAM	Standard	Biochemistry Biomedical Science Life Science	Annotation Mathematical model Chemical entity Enzymatic reaction Pathway model Plus 1 more...	All	Identifiers.org Central Registry BioModels YEASTNET JWS Online BiGG Models	BioPAX CellML SED-ML SBML SBOL Plus 4 more...	EMBO Recommended Databases and Data Standards Rockefeller University Press - Journal Of Cell Biology - Data Deposition Advanced Genetics Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition	Computational Modeling FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations Chemistry Advanced Genetics Plus 1 more...
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource	MGI	Database	Life Science Ontology and Terminology	Cytogenetic map Gene Ontology enrichment Gene expression data Gene name Genetic polymorphism Plus 11 more...	Mus musculus	FlyBase MitoMiner SGD WormBase Ensembl Plus 10 more...	SO ECO MP HP DOID Plus 8 more...	Elsevier's Data Policy Advanced Genetics SciData Data Policy Elsevier - Current Opinion in Cell Biology - Guide for Authors	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics COVID-19 Resources Plus 1 more...
mz Markup Language	mzML	Standard	Life Science	Mass spectrometry spectra Centrally registered identifier Mass spectrometry assay Protein	All	MOPED MitoZoa PRIDE PeptideAtlas World-2DPAGE Plus 2 more...	mzQuantML PSI SpML imzML MIAPE mz5 Plus 7 more...	EMBO Recommended Databases and Data Standards Advanced Genetics	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project FAIRDOM Community Standards eTRIKS Standards Starter Pack HUPO Proteomics Standards Initiative Plus 1 more...
NCBI BioProject	BioProject	Database	Data Submission, Annotation and Curation Life Science	Annotation Experiment metadata Genomic assembly Data storage Sequencing	All	DDBJ BioProject PATRIC	BioProject XML Schema	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 4 more...	Advanced Genetics
NCBI BioSample	BioSample	Database	Life Science	DNA structural variation Gene expression data Assay Cell line Genotype Plus 2 more...	All	GenBank GEO SRA dbGaP dkNET Plus 3 more...	BioProject XML Schema FAANG metadata sample specification standard FAANG metadata experiment specification standard FAANG metadata analysis specification	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Springer Nature - Nature Medicine - Availability of Data and materials Plus 16 more...	Data Citation Implementation Advanced Genetics RDA Covid-19 WG Resources
NCBI Gene	Gene	Database	Life Science	Deoxyribonucleic acid Gene Genome	All	WikiPathways CTD ImmPort Wikidata	GO FASTA	MNI Open Research UCL Child Open Health Research HRB Open Research American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors AAS Policy Plus 4 more...	Advanced Genetics
NCBI Probe Database	ProbeDB	Database	Life Science	Gene expression data Genetic polymorphism Oligonucleotide probe annotation Polymerase chain reaction primers Nucleotide	All	None	None	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 3 more...	RDA Covid-19 WG Resources Advanced Genetics
NCBI Trace Archives	NCBI Trace Archives	Database	Life Science	Multiple sequence alignment region	All	DDBJ Trace Archive	None	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 37 more...	Data Citation Implementation Advanced Genetics
NCBI Viral Genomes Resource	NCBI Viral Genomes Resource	Database	Genomics Virology	Viral genome Deoxyribonucleic acid Genome Ribonucleic acid	Viruses	GenBank DDBJ ENA VirHostNet RefSeq Plus 1 more...	FASTA	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 3 more...	RDA Covid-19 WG Resources Advanced Genetics
NCI Thesaurus	NCIt	Standard	Biomedical Science Ontology and Terminology Preclinical Studies Translational Medicine	Cancer Disease	Homo sapiens	neXtProt PID arrayMap PDX Finder OBO Plus 2 more...	DOID FHIR ROO CSEO SRAO Plus 2 more...	Advanced Genetics	H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack AIRR Data Commons Advanced Genetics RDA Covid-19 WG Resources
Online Mendelian Inheritance in Man	OMIM	Database	Biomedical Science	Disease Genetic disorder Genotype Phenotype	Homo sapiens	MitoMiner NCG Autism KB CTD STRING Plus 13 more...	OMIM Ontology HP	Elsevier's Data Policy Cold Spring Harbor Lab Press - Genome Research Advanced Genetics Elsevier - The Lancet - Information for Authors Elsevier - Current Opinion in Cell Biology - Guide for Authors Plus 3 more...	Systems Medicine Advanced Genetics
Ontology for Biomedical Investigations	OBI	Standard	Biomedical Science Functional Genomics Life Science Ontology and Terminology	Experiment metadata Report Assay Data transformation Device Plus 3 more...	All	SCDE ViPR IRD EuPathDB NIF Plus 10 more...	FuGEFlow ChEBI CL NEMO ECO Plus 33 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation DNA Microarray bioCADDIE eTRIKS Standards Starter Pack Advanced Genetics Plus 1 more...
Open Science Framework	OSF	Database	Data Management	Cancer Data storage Study design	All	figshare ORCID Registry Mendeley Data DataCite DataverseNL	DataCite Metadata Schema DOI JSON Crossref Metadata Deposit Schema	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories HRB Open Research AAS Policy Plus 11 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics General Repository Comparison
PRoteomics IDEntifications database	PRIDE	Database	Life Science Proteomics	Peptide identification Protein identification Curated information Peptide Protein	All	BioSD Expression Atlas Ensembl ProteomeXchange Cellosaurus Plus 6 more...	mzQuantML mzML HUPO-PSI TraML MIAPE OmicsDI XML format Plus 9 more...	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 34 more...	Data Citation Implementation EOSC-Life ELIXIR Core Data Resources and Deposition Databases Advanced Genetics
PSI Molecular Interaction Controlled Vocabulary	PSI-MI CV	Standard	Life Science	Protein interaction Molecular interaction Protein	All	ELM MINT modMine PINA APID Interactomes Plus 7 more...	MITAB MIAPAR MIMIx INO ReTO Plus 6 more...	Elsevier's Data Policy Advanced Genetics	HUPO Proteomics Standards Initiative Advanced Genetics
PubChem	PubChem	Database	Epidemiology Life Science Virology	Assay Protein Small molecule Structure	All	ChEMBL WikiPathways CTD Guide to Pharmacology ChemIDplus Plus 11 more...	CHEMINF GO MIARE MESH NDFRT Plus 2 more...	Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 2 (for life sciences) Plus 22 more...	NIH-supported data repositories Toxicology Data Citation Implementation Open Science Prize Advanced Genetics Plus 2 more...

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