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Recommendation

Advanced Genetics

Standards and databases currently recommended in the Advanced Genetics Author Guidelines

This record is maintained by: MylesAxton ORCID

This recommendation is taken from the following policy:

Advanced Genetics.

Record added: Feb. 28, 2019, 4:59 p.m..
Record updated: July 16, 2020, 9:23 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 13:46, 18 Apr 2019 (approved):

	'reference_url' has been modified:
		Before: https://onlinelibrary.wiley.com/journal/26416573/homepage/forauthors.html
		After: https://onlinelibrary.wiley.com/page/journal/26416573/homepage/author-guidelines

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 15:43, 18 Apr 2019 (approved):

	'standards' has been modified:
		Before:
		After:
			FORCE11 Data Citation Principles
		Added:
			FORCE11 Data Citation Principles
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 15:49, 18 Apr 2019 (approved):

	'standards' has been modified:
		Before:
			FORCE11 Data Citation Principles
		After:
			CellML
			Environment Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			Investigation Study Assay Tabular
			Experimental Factor Ontology
			mz Markup Language
			Human Phenotype Ontology
			PSI Molecular Interaction Controlled Vocabulary
			Minimal Information Required In the Annotation of Models
			Units Ontology
			BioAssay Ontology
			eagle-i Research Resource Ontology
			DataCite Metadata Schema
			Systems Biology Markup Language
			FORCE11 Data Citation Principles
			ThermoML
			Research Resource Identifiers
		Added:
			CellML
			Environment Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			Investigation Study Assay Tabular
			Experimental Factor Ontology
			mz Markup Language
			Human Phenotype Ontology
			PSI Molecular Interaction Controlled Vocabulary
			Minimal Information Required In the Annotation of Models
			Units Ontology
			BioAssay Ontology
			eagle-i Research Resource Ontology
			DataCite Metadata Schema
			Systems Biology Markup Language
			ThermoML
			Research Resource Identifiers
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 15:56, 18 Apr 2019 (approved):

	'databases' has been modified:
		Before:
		After:
			GenBank
			ChEMBL
			FlyBase
			The Arabidopsis Information Resource
			WormBase
			MetaboLights
			ArrayExpress
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			HUGO Gene Nomenclature Committee
			Eukaryotic Pathogen Database Resources
			Rat Genome Database
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			NCBI Probe Database
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Sequence Read Archive
			NCBI Gene
			NCBI Viral genomes
			PubChem
			Database of Genotypes and Phenotypes
			Database of genomic structural VARiation
			UniProt Knowledgebase
			Xenopus laevis and tropicalis biology and genomics resource
			The Zebrafish Information Network
			Database of Genomic Variants Archive
			NCBI Trace Archives
			Open Science Framework
			MGI Mouse Gene Expression Database
			NCBI BioProject
			NCBI BioSample
			Online Mendelian Inheritance in Man
			Japanese Genotype-phenotype Archive
			Synapse
			Zenodo
			Allele Frequency Net Database
			Leiden Open Variation Database
			FAIRsharing
			Ag Data Commons
		Added:
			GenBank
			ChEMBL
			FlyBase
			The Arabidopsis Information Resource
			WormBase
			MetaboLights
			ArrayExpress
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			HUGO Gene Nomenclature Committee
			Eukaryotic Pathogen Database Resources
			Rat Genome Database
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			NCBI Probe Database
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Sequence Read Archive
			NCBI Gene
			NCBI Viral genomes
			PubChem
			Database of Genotypes and Phenotypes
			Database of genomic structural VARiation
			UniProt Knowledgebase
			Xenopus laevis and tropicalis biology and genomics resource
			The Zebrafish Information Network
			Database of Genomic Variants Archive
			NCBI Trace Archives
			Open Science Framework
			MGI Mouse Gene Expression Database
			NCBI BioProject
			NCBI BioSample
			Online Mendelian Inheritance in Man
			Japanese Genotype-phenotype Archive
			Synapse
			Zenodo
			Allele Frequency Net Database
			Leiden Open Variation Database
			FAIRsharing
			Ag Data Commons
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 16:06, 18 Apr 2019 (approved):

	'databases' has been modified:
		Before:
			GenBank
			ChEMBL
			FlyBase
			The Arabidopsis Information Resource
			WormBase
			MetaboLights
			ArrayExpress
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			HUGO Gene Nomenclature Committee
			Eukaryotic Pathogen Database Resources
			Rat Genome Database
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			NCBI Probe Database
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Sequence Read Archive
			NCBI Gene
			NCBI Viral genomes
			PubChem
			Database of Genotypes and Phenotypes
			Database of genomic structural VARiation
			UniProt Knowledgebase
			Xenopus laevis and tropicalis biology and genomics resource
			The Zebrafish Information Network
			Database of Genomic Variants Archive
			NCBI Trace Archives
			Open Science Framework
			MGI Mouse Gene Expression Database
			NCBI BioProject
			NCBI BioSample
			Online Mendelian Inheritance in Man
			Japanese Genotype-phenotype Archive
			Synapse
			Zenodo
			Allele Frequency Net Database
			Leiden Open Variation Database
			FAIRsharing
			Ag Data Commons
		After:
			GenBank
			ChEMBL
			FlyBase
			The Arabidopsis Information Resource
			WormBase
			MetaboLights
			ArrayExpress
			European Nucleotide Archive
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			HUGO Gene Nomenclature Committee
			Eukaryotic Pathogen Database Resources
			Rat Genome Database
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			NCBI Probe Database
			Database of Single Nucleotide Polymorphism
			Gene Expression Omnibus
			Sequence Read Archive
			NCBI Gene
			NCBI Viral genomes
			PubChem
			Database of Genotypes and Phenotypes
			Database of genomic structural VARiation
			UniProt Knowledgebase
			Xenopus laevis and tropicalis biology and genomics resource
			The Zebrafish Information Network
			Database of Genomic Variants Archive
			NCBI Trace Archives
			Open Science Framework
			MGI Mouse Gene Expression Database
			NCBI BioProject
			NCBI BioSample
			ClinVar
			Online Mendelian Inheritance in Man
			Japanese Genotype-phenotype Archive
			Synapse
			Zenodo
			Allele Frequency Net Database
			Leiden Open Variation Database
			FAIRsharing
			Ag Data Commons
		Added:
			ClinVar
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'MylesAxton' at 16:03, 18 Apr 2019 (approved):

	'standards' has been modified:
		Before:
			CellML
			Environment Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			Investigation Study Assay Tabular
			Experimental Factor Ontology
			mz Markup Language
			Human Phenotype Ontology
			PSI Molecular Interaction Controlled Vocabulary
			Minimal Information Required In the Annotation of Models
			Units Ontology
			BioAssay Ontology
			eagle-i Research Resource Ontology
			DataCite Metadata Schema
			Systems Biology Markup Language
			FORCE11 Data Citation Principles
			ThermoML
			Research Resource Identifiers
		After:
			CellML
			Environment Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			Investigation Study Assay Tabular
			Experimental Factor Ontology
			NCI Thesaurus
			mz Markup Language
			Human Phenotype Ontology
			PSI Molecular Interaction Controlled Vocabulary
			Minimal Information Required In the Annotation of Models
			Units Ontology
			BioAssay Ontology
			eagle-i Research Resource Ontology
			DataCite Metadata Schema
			Systems Biology Markup Language
			FORCE11 Data Citation Principles
			The Data Use Ontology
			ThermoML
			Research Resource Identifiers
			FAIR Metrics - Machine-readability of metadata
			FAIR Metrics - Accessible Usage License
			FAIR Metrics -  Detailed Provenance
			FAIR Metrics -  Meets Community Standards
		Added:
			NCI Thesaurus
			The Data Use Ontology
			FAIR Metrics - Machine-readability of metadata
			FAIR Metrics - Accessible Usage License
			FAIR Metrics -  Detailed Provenance
			FAIR Metrics -  Meets Community Standards
		Removed:

Edits to 'https://fairsharing.org/bsg-c000058' by 'The FAIRsharing Team' at 16:54, 25 Apr 2019 (approved):

	'recommendation' has been modified:
		Before: False
		After: True

Edits to 'https://fairsharing.org/bsg-c000058' by 'The FAIRsharing Team' at 21:23, 16 Jul 2020 (approved):

	'name' has been modified:
		Before: Genetics & Genomics Next
		After: Advanced Genetics

	'onto_disciplines' has been modified:
		Before:
			Biomedical Science
			Epigenomics
			Functional Genomics
			Genetics
			Genomics
			Life Science
		After:
		Added:
		Removed:
			Biomedical Science
			Epigenomics
			Functional Genomics
			Genetics
			Genomics
			Life Science

	'onto_domains' has been modified:
		Before:
			Experiment report
			Knowledge representation role
			biological_process
		After:
		Added:
		Removed:
			Experiment report
			Knowledge representation role
			biological_process

	'link_name' has been modified:
		Before: GeneticsGenomicsNext
		After: AdvancedGenetics

	'taxonomies' has been modified:
		Before:
			All
		After:
		Added:
		Removed:
			All

	'description' has been modified:
		Before: Standards and databases currently recommended in the GGN Author Guidelines
		After: Standards and databases currently recommended in the Advanced Genetics Author Guidelines

Showing records 1 - 50 of 65.

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Ag Data Commons	Ag Data Commons	Database	Agricultural Engineering Agriculture Agroecology Agronomy Animal Husbandry Plus 19 more...	Agricultural products Agroecosystem Bioenergy Geographical location Legal regulation Plus 7 more...	All Animalia Archaea Bacteria Chromista Plus 4 more...	ITIS	RDF FORCE11 DC DataCite Metadata Schema Schema.org DC Plus 4 more...	Advanced Genetics SciData Data Policy	AgBioData Advanced Genetics
Allele Frequency Net Database	AFND	Database	Biomedical Science Genomics Human Genetics	Genetic polymorphism Human leukocyte antigen complex Major histocompatibility complex Killer-cell Immunoglobulin-like Receptors Allele Plus 3 more...	Homo sapiens	IPD-IMGT/HLA	None	Elsevier's Data Policy Cell Press - Cell Metabolism - Information for Authors Advanced Genetics Cell Press - Neuron - Information for Authors Cell Press - Molecular Cell - Information for Authors Plus 6 more...	Advanced Genetics
ArrayExpress	ArrayExpress	Database	Functional Genomics	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Experimental measurement Gene expression data Plus 7 more...	All	BioSD Expression Atlas Bgee ENA GEO Plus 14 more...	MAGE-TAB EFO MINSEQE MIAME/Env MIAME Plus 3 more...	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Elsevier's Data Policy EMBO Recommended Databases and Data Standards Plus 53 more...	Data Citation Implementation EOSC-Life ELIXIR Core Data Resources and Deposition Databases Advanced Genetics RDA Covid-19 WG Resources
BioAssay Ontology	BAO	Standard	Biochemistry Biomedical Science Life Science Ontology and Terminology	Assay Biological process Cell Chemical entity Molecular entity Plus 3 more...	All	ChEMBL PubChem LINCS Data Portal RegenBase DTC	CL SIO PATO ENM BAO-GPCR Plus 3 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Advanced Genetics
CellML	CellML	Standard	Life Science Physiology	Mathematical model Cell Modeling and simulation	All	BioModels KiMoSys PMR	RDF MathML XML BioSimulators formats MIRIAM Plus 4 more...	EMBO Recommended Databases and Data Standards Advanced Genetics	Computational Modeling (COMBINE) FAIRDOM Community Standards The NormSys Registry for Modeling Standards ISO/CD 20691 Collection - DRAFT Advanced Genetics Plus 1 more...
ChEMBL	ChEMBL	Database	Biochemistry Drug Discovery Genomics Medicinal Chemistry	Chemical structure Bioactivity Chemical entity Drug Genome Plus 2 more...	All	BindingDB GPCRdb Guide to Pharmacology PubChem Cellosaurus Plus 10 more...	ChEBI BTO CHEMINF UO BAO Plus 6 more...	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 4 more...	Toxicology Data Citation Implementation EOSC-Life Bioschemas ELIXIR Core Data Resources and Deposition Databases Plus 1 more...
ClinVar	ClinVar	Database	Biomedical Science Clinical Studies Genomics Preclinical Studies	Genetic polymorphism Disease	Homo sapiens	ArrayExpress dbSNP dbVar EVA DataMed Plus 7 more...	SNOMEDCT VCF HP HGNC SO Plus 1 more...	Advanced Genetics	RDA Covid-19 WG Resources Advanced Genetics
Database of genomic structural VARiation	dbVar	Database	Biomedical Science Genomics Structural Biology Structural Genomics	DNA structural variation Genetic polymorphism Chromatin structure variation Genome Insertion	Homo sapiens	DGVa ClinVar DGV BovineMine	VarioML Common Metadata Elements for Cataloging Biomedical Datasets	PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Cold Spring Harbor Lab Press - Genome Research Plus 37 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics
~~Database of Genomic Variants Archive~~	~~DGVa~~	Database	Genomics	Genetic polymorphism Curated information Structure Sequence variant	All	ArrayExpress ENA EGA Ensembl dbVar Plus 2 more...	None	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Springer Nature - Research Data Policies HRB Open Research Plus 25 more...	Data Citation Implementation Advanced Genetics
Database of Genotypes and Phenotypes	dbGaP	Database	Biomedical Science Epigenetics Genetics	Gene expression data Genetic polymorphism Genome-wide association study Genotype Phenotype	Homo sapiens	EGA GWAS Central ImmPort BioSample NSRR Plus 5 more...	VCF SRA-XML DUO Common Metadata Elements for Cataloging Biomedical Datasets BAM	NIH GWAS Sharing Policy IH Policy on sharing of model organisms for Biomedical Research PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Plus 39 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics RDA Covid-19 WG Resources
Database of Single Nucleotide Polymorphism	dbSNP	Database	Life Science	Genetic polymorphism Single nucleotide polymorphism Genome	Homo sapiens	PolymiRTS T1DBase GWAS Central EVA ClinVar Plus 6 more...	JSON XML Common Metadata Elements for Cataloging Biomedical Datasets	NIH GWAS Sharing Policy PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Plus 38 more...	NIH-supported data repositories Data Citation Implementation National Child Development Study (UK) Open Science Prize Advanced Genetics
DataCite Metadata Schema	DataCite Metadata Schema	Standard	Life Science	Annotation Data retrieval Resource metadata Centrally registered identifier	All	figshare Dryad GigaDB PANGAEA OSF Plus 48 more...	OpenAIRE Guidelines for Data Archives ECRIN MDR schema DCTERMS EngMeta Common Metadata Elements for Cataloging Biomedical Datasets Plus 3 more...	MNI Open Research UCL Child Open Health Research HRB Open Research JNCI: Journal of the National Cancer Institute Data Policy AAS Policy Plus 7 more...	Crosswalk of most used metadata schemes and guidelines for metadata interoperability Advanced Genetics bioCADDIE
eagle-i Research Resource Ontology	ERO	Standard	Biomedical Science Life Science Ontology and Terminology	Biological sample Protocol Reagent Study design	All	OBO	DRAO UBERON BRO GenEpiO OBI Plus 3 more...	Advanced Genetics SciData Data Policy	Advanced Genetics Cell Migration Standardisation Organisation
Environment Ontology	ENVO	Standard	Ecology Environmental Science Epidemiology Life Science Nutritional Science Plus 1 more...	Environmental material Marine metagenome Microbiome	Algae Archaea Bacteria Eukaryota Fungi Plus 3 more...	GOLD Gramene MCDRP DataONE OBO Plus 3 more...	ChEBI OBO_REL PATO NCBITAXON MIxS - MIMARKS Plus 11 more...	Advanced Genetics SciData Data Policy	Toxicology Advanced Genetics Systems Medicine RDA Covid-19 WG Resources
Eukaryotic Pathogen, Vector and Host Informatics Resource	VEuPathDB	Database	Comparative Genomics Genomics Population Genetics	Genome Orthologous Pathogen Phenotype	Anncaliia Babesia Crithidia Cryptosporidium Edhazardia Plus 19 more...	FungiDB CryptoDB GiardiaDB MicrosporidiaDB PlasmoDB Plus 6 more...	OBI FASTA GFF3 Common Metadata Elements for Cataloging Biomedical Datasets	PLOS Recommended Repositories Advanced Genetics SciData Data Policy eLife Data Policy	NIH-supported data repositories Data Citation Implementation Open Science Prize EOSC-Life ELIXIR UK node resources Plus 1 more...
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Functional Genomics Genomics Plus 2 more...	Annotation DNA sequence data Genomic assembly Sequence annotation Data storage Plus 6 more...	All	GenBank BioSD DDBJ ArrayExpress Europe PMC Plus 22 more...	SRA-XML NCBITAXON MIASPPE FASTA INSDSeq Plus 7 more...	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Elsevier's Data Policy Plus 61 more...	Data Citation Implementation EOSC-Life ELIXIR Core Data Resources and Deposition Databases Advanced Genetics RDA Covid-19 WG Resources Plus 1 more...
Experimental Factor Ontology	EFO	Standard	Functional Genomics Ontology and Terminology	Experimental measurement Assay Genome-wide association study Study design Independent variable	All	BioSD Expression Atlas SCDE ArrayExpress EGA Plus 12 more...	ChEBI CL NEMO CCONT FAANG metadata sample specification standard Plus 6 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Advanced Genetics RDA Covid-19 WG Resources
FAIR Metrics - Accessible Usage License	FM-R1.1	Standard	Data Governance	FAIR Resource metadata Digital curation	Not applicable	None	FAIR	Advanced Genetics	Advanced Genetics
FAIR Metrics - Detailed Provenance	FM-R1.2	Standard	Data Governance	Data identity and mapping FAIR Resource metadata Digital curation	Not applicable	None	FAIR	Advanced Genetics	Advanced Genetics
FAIR Metrics - Machine-readability of metadata	FM-F2	Standard	Data Governance	Data identity and mapping FAIR Resource metadata Digital curation	Not applicable	None	FAIR	Advanced Genetics	Advanced Genetics
FAIR Metrics - Meets Community Standards	FM-R1.3	Standard	Data Governance	Data identity and mapping FAIR Digital curation	Not applicable	None	FAIR	Advanced Genetics	Advanced Genetics
FAIRsharing	FAIRsharing	Database	Agriculture Biomedical Science Earth Science Environmental Science Humanities Plus 2 more...	FAIR	All	ORCID Registry	Schema.org BioDBCore Bioschemas SRAO DOI Plus 4 more...	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Elsevier's Data Policy EMBO Recommended Databases and Data Standards Plus 13 more...	EOSC-Life Bioschemas ELIXIR Recommended Interoperability Resources ELIXIR UK node resources Advanced Genetics
FlyBase	FlyBase	Database	Anatomy Bioinformatics Comparative Genomics Data Submission, Annotation and Curation Functional Genomics Plus 5 more...	Bibliography Biocuration CRISPR Citation Clone library Plus 27 more...	Drosophila Drosophila ananassae Drosophila erecta Drosophila grimshawi Drosophila melanogaster Plus 8 more...	DRSC-FGR NONCODE SGD WormBase GenomeRNAi Plus 16 more...	FBdv FBbi SO ECO FBsp Plus 14 more...	PLOS Recommended Repositories Elsevier's Data Policy Rockefeller University Press - Journal Of Cell Biology - Data Deposition Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council Advanced Genetics Plus 4 more...	NIH-supported data repositories Open Science Prize Advanced Genetics
FORCE11 Data Citation Principles	FORCE11 DC	Standard	Life Science	Citation	All	Zenodo Ag Data Commons Imperial College Research Data Repository DataStream DesignSafe Data Depot Repository	Compact Identifier Format Reporting guidelines for research resources	MNI Open Research UCL Child Open Health Research HRB Open Research JNCI: Journal of the National Cancer Institute Data Policy AAS Policy Plus 11 more...	ISO/CD 20691 Collection - DRAFT Advanced Genetics
GenBank	GenBank	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Epidemiology Functional Genomics Plus 4 more...	Annotation DNA sequence data Genomic assembly Nucleic acid sequence Data storage Plus 9 more...	All	DDBJ IMG/M NONCODE GENI-ACT GOLD Plus 22 more...	SRA-XML NCBITAXON GenBank Sequence Format FASTA ABCDDNA Plus 6 more...	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Elsevier's Data Policy Plus 67 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics COVID-19 Resources Plus 2 more...
Gene Expression Omnibus	GEO	Database	Epidemiology Life Science Virology	DNA microarray Gene expression data Genome	All	NONCODE Nematode.net Bgee ArrayExpress SMD Plus 27 more...	FAANG metadata experiment specification standard MIAME/Env MINiML SOFT Common Metadata Elements for Cataloging Biomedical Datasets Plus 1 more...	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Elsevier's Data Policy Plus 64 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics Systems Medicine Plus 3 more...
HUGO Gene Nomenclature Committee	HGNC	Database	Life Science Ontology and Terminology	Gene name Gene	Homo sapiens	FlyBase STRING HPRD MGDD CRC Atlas Plus 13 more...	HGNC VGNC	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 6 more...	Data Citation Implementation Advanced Genetics
Human Phenotype Ontology	HP	Standard	Biomedical Science Genetics Ontology and Terminology Phenomics Preclinical Studies	Disease Phenotype	Homo sapiens	GWASdb RGD MGI Orphanet GWAS Central Plus 13 more...	MP DOID ORDO BDO GVF Guidelines Plus 9 more...	Advanced Genetics	Cell Migration Standardisation Organisation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Advanced Genetics Plus 2 more...
Investigation Study Assay Tabular	ISA-Tab	Standard	Functional Genomics Life Science	Biological sample DNA microarray Experimental measurement Gene expression data Report Plus 7 more...	All	SCDE MTBLS GMD CEBS GigaDB Plus 11 more...	CL OBI ECO BTO RNAO Plus 21 more...	EMBO Recommended Databases and Data Standards Advanced Genetics BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project FAIRDOM Community Standards bioCADDIE eTRIKS Standards Starter Pack Plus 8 more...
Japanese Genotype-phenotype Archive	JGA	Database	Biomedical Science Epigenetics Human Genetics	Gene expression data Genetic polymorphism Genotype Phenotype	Homo sapiens	DDBJ	SRA-XML VCF	Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 2 (for life sciences) Springer Nature Research Data Policy Type 2 Plus 4 more...	RDA Covid-19 WG Resources Advanced Genetics
Leiden Open Variation Database	LOVD	Database	Biomedical Science Human Genetics	Genetic polymorphism Deoxyribonucleic acid Disease Gene Genetic disorder Plus 2 more...	Homo sapiens	EVA	HGNC	Cell Press - Cell Metabolism - Information for Authors Advanced Genetics Cell Press - Molecular Cell - Information for Authors Elsevier - The Lancet - Information for Authors Elsevier - Current Opinion in Cell Biology - Guide for Authors Plus 5 more...	Advanced Genetics
MetaboLights	MTBLS	Database	Data Submission, Annotation and Curation Metabolomics Structural Biology	Biocuration Biological sample Chemical formula Chemical structure Mass spectrometry spectra Plus 9 more...	All	Rhea WikiPathways BRENDA OmicsDI DES-TOMATO Plus 1 more...	nmrCV ISA-Tab ChEBI PSI-MS CV BTO Plus 3 more...	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Plus 18 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project EOSC-Life ELIXIR Core Data Resources and Deposition Databases Plus 2 more...
MGI Mouse Gene Expression Database	GXD	Database	Genetics Genomics Transcriptomics	Gene expression data Model organism RNA sequencing Genome	Mus musculus	Expression Atlas ArrayExpress MGI GEO MouseMine Plus 1 more...	MA EMAP GO DOID ATOL Plus 1 more...	PLOS Recommended Repositories Advanced Genetics eLife Data Policy	RDA Covid-19 WG Resources Advanced Genetics
MIAME Notation in Markup Language	MINiML	Standard	Functional Genomics Life Science	DNA microarray Gene expression data Report Assay	All	GEO SMIR	XML MIAME	Advanced Genetics BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	bioCADDIE Advanced Genetics RDA Covid-19 WG Resources
Minimal Information Required In the Annotation of Models	MIRIAM	Standard	Biochemistry Biomedical Science Life Science	Annotation Mathematical model Chemical entity Enzymatic reaction Modeling and simulation Plus 2 more...	All	Identifiers.org Central Registry BioModels YEASTNET JWS Online BiGG Models	SBO CellML KiSAO BioPAX OMEX Plus 4 more...	EMBO Recommended Databases and Data Standards Rockefeller University Press - Journal Of Cell Biology - Data Deposition Advanced Genetics Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition	FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations Chemistry ISO/CD 20691 Collection - DRAFT Advanced Genetics Plus 1 more...
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource	MGI	Database	Life Science Ontology and Terminology	Cytogenetic map Gene Ontology enrichment Gene expression data Gene name Genetic polymorphism Plus 11 more...	Mus musculus	FlyBase MitoMiner SGD WormBase Ensembl Plus 11 more...	SO ECO HP MP DOID Plus 10 more...	Advanced Genetics SciData Data Policy Elsevier - Current Opinion in Cell Biology - Guide for Authors	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics COVID-19 Resources Plus 1 more...
mz Markup Language	mzML	Standard	Life Science	Mass spectrometry spectra Centrally registered identifier Mass spectrometry assay Protein	All	MOPED MitoZoa PRIDE PeptideAtlas World-2DPAGE Plus 2 more...	mzQuantML PSI SpML imzML MIAPE mz5 Plus 7 more...	EMBO Recommended Databases and Data Standards Advanced Genetics	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project FAIRDOM Community Standards eTRIKS Standards Starter Pack HUPO Proteomics Standards Initiative Plus 2 more...
NCBI BioProject	BioProject	Database	Data Submission, Annotation and Curation Life Science	Annotation Experimental measurement Genomic assembly Data storage Experimentally determined Plus 1 more...	All	BioSample DataMed DDBJ BioProject PATRIC	BioProject XML Schema	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 4 more...	Advanced Genetics
NCBI BioSample	BioSample	Database	Biology	Biological sample DNA structural variation Gene expression data Assay Cell line Plus 6 more...	All	GenBank GEO SRA dbGaP dkNET Plus 4 more...	FAANG metadata experiment specification standard BioProject XML Schema FAANG metadata analysis specification FAANG metadata sample specification standard	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Springer Nature - Nature Medicine - Availability of Data and materials Plus 16 more...	Data Citation Implementation Advanced Genetics RDA Covid-19 WG Resources
NCBI Gene	NCBI Gene	Database	Genetics Genomics	DNA sequence data Gene expression data Molecular structure Chromosome Deoxyribonucleic acid Plus 10 more...	All	WikiPathways CTD RefSeq ImmPort Wikidata	GO FASTA	MNI Open Research UCL Child Open Health Research American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors HRB Open Research AAS Policy Plus 4 more...	Advanced Genetics
NCBI Probe Database	ProbeDB	Database	Life Science	Gene expression data Genetic polymorphism Oligonucleotide probe annotation Polymerase chain reaction primers Nucleotide	All	None	None	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 3 more...	RDA Covid-19 WG Resources Advanced Genetics
NCBI Trace Archives	NCBI Trace Archives	Database	Life Science	Multiple sequence alignment region	All	DDBJ Trace Archive	None	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Plus 37 more...	Data Citation Implementation Advanced Genetics
NCBI Viral Genomes Resource	NCBI Viral Genomes Resource	Database	Genomics Virology	Viral genome Deoxyribonucleic acid Genome Ribonucleic acid	Viruses	GenBank DDBJ ENA VirHostNet RefSeq Plus 1 more...	FASTA	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 3 more...	RDA Covid-19 WG Resources Advanced Genetics
NCI Thesaurus	NCIt	Standard	Biomedical Science Ontology and Terminology Preclinical Studies Translational Medicine	Cancer Disease	Homo sapiens	neXtProt PID arrayMap ImmPort PDX Finder Plus 3 more...	DOID FHIR ROO CSEO GenEpiO Plus 3 more...	Advanced Genetics	H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack Pistoia Alliance FIP draft AIRR Data Commons ISO/CD 20691 Collection - DRAFT Plus 2 more...
Online Mendelian Inheritance in Man	OMIM	Database	Human Genetics	Disease Gene Genetic disorder Genotype Phenotype	Homo sapiens	MitoMiner NCG Autism KB CTD STRING Plus 15 more...	OMIM Ontology HP	Cold Spring Harbor Lab Press - Genome Research Advanced Genetics Elsevier - The Lancet - Information for Authors Elsevier - Current Opinion in Cell Biology - Guide for Authors Elsevier - Lancet Neurology - Information for Authors Plus 2 more...	Systems Medicine Advanced Genetics
Ontology for Biomedical Investigations	OBI	Standard	Biomedical Science Functional Genomics Life Science Ontology and Terminology	Report Assay Data transformation Device Protocol Plus 3 more...	All	SCDE ViPR IRD VEuPathDB NIF Plus 11 more...	FuGEFlow ISA-Tab ChEBI CL NEMO Plus 38 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation bioCADDIE eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Advanced Genetics Plus 1 more...
Open Science Framework	OSF	Database	Data Management	Cancer Data storage Study design	All	figshare ORCID Registry DataCite DataverseNL BOARD	DataCite Metadata Schema DOI JSON Crossref Metadata Deposit Schema	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Elsevier's Data Policy HRB Open Research Plus 15 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize Advanced Genetics General Repository Comparison
PRoteomics IDEntifications database	PRIDE	Database	Life Science Proteomics	Peptide identification Protein identification Curated information Peptide Protein	All	BioSD Expression Atlas Ensembl gpmDB ProteomeXchange Plus 8 more...	mzQuantML HUPO-PSI TraML mzML MIAPE OmicsDI XML format Plus 9 more...	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Plus 34 more...	Data Citation Implementation EOSC-Life ELIXIR Core Data Resources and Deposition Databases Advanced Genetics
PSI Molecular Interaction Controlled Vocabulary	PSI-MI CV	Standard	Life Science	Protein interaction Molecular interaction Protein	All	ELM MINT modMine PINA APID Interactomes Plus 7 more...	MITAB MIAPAR MIMIx INO ReTO Plus 6 more...	Advanced Genetics	HUPO Proteomics Standards Initiative ISO/CD 20691 Collection - DRAFT Advanced Genetics
PubChem	PubChem	Database	Epidemiology Life Science Virology	Molecular structure Assay Protein Small molecule Structure	All	ChEMBL WikiPathways CTD Guide to Pharmacology ChemIDplus Plus 16 more...	CHEMINF GO MIARE MESH NDFRT Plus 4 more...	PLOS Recommended Repositories Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 2 (for life sciences) Plus 22 more...	NIH-supported data repositories Toxicology Data Citation Implementation Open Science Prize Advanced Genetics Plus 2 more...

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