FAIRsharing Collection: Cell Migration Standardisation Organisation

Cell Migration Standardisation Organisation

Collection of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).

This record is maintained by: agbeltran ORCID , sbesson ORCID

Record added: June 26, 2016, 8:45 a.m..
Record updated: Jan. 25, 2018, 1:59 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 17:38, 19 Jul 2018 (approved):

	'description' has been modified:
		Before: Set of standards and databases relevant for the Cell Migration Standards Organisation (CMSO).
		After: Set of standards and databases relevant for the Cell Migration Standards Organisation (CMSO).

Edits to 'https://fairsharing.org/bsg-c000022' by 'sbesson' at 17:38, 19 Jul 2018 (approved):

	'description' has been modified:
		Before: Set of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).
		After: Set of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 17:38, 19 Jul 2018 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
		After:
			Chemical Entities of Biological Interest
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
			eagle-i Research Resource Ontology
			Experimental Factor Ontology
			Human Phenotype Ontology
		Added:
			eagle-i Research Resource Ontology
			Experimental Factor Ontology
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 17:38, 19 Jul 2018 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Experimental Factor Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
		After:
			Chemical Entities of Biological Interest
			Experimental Factor Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
			NCBI Taxonomy
			Ontology for Biomedical Investigations
			Statistics Ontology
			Units of measurement
		Added:
			NCBI Taxonomy
			Units of measurement
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 17:38, 19 Jul 2018 (approved):

	'reference_url' has been modified:
		Before: cellmigstandorg.github.io
		After: cellmigstandorg.github.io

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 17:38, 19 Jul 2018 (approved):

	'standards' has been modified:
		Before:
			Ontology for Biomedical Investigations
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Cell Ontology
			Human Phenotype Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Phenotypic QualiTy Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Minimal Information About T Cell Assays
			Units of measurement
			Cell Behavior Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
		After:
			Ontology for Biomedical Investigations
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Cell Ontology
			Human Phenotype Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Phenotypic QualiTy Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Minimal Information About T Cell Assays
			Units of measurement
			Cell Behavior Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
			Sequence Ontology
		Added:
			Sequence Ontology
		Removed:

25 records in view

Name	Abbreviation	Type	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
BioAssay Ontology	BAO	Standard	Assay Biochemistry Biological process Biomedical Science Cell Plus 6 more...	All	PubChem	UO SIO OWL ENM BAO-GPCR	Scientific Data Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Cell Behavior Ontology	CBO	Standard	Cell Life Science Mathematical model Systems biology	All	None	None	None	Cell Migration Standardisation Organisation
Cell Culture Ontology	CCONT	Standard	Biomedical Science Cell Cell culture Cell line Disease process modeling Plus 1 more...	Homo sapiens	None	None	None	Cell Migration Standardisation Organisation
Cell Cycle Ontology	CCO	Standard	Cell Cell cycle Life Science	All	None	ReXO GeXO ReTO	None	Cell Migration Standardisation Organisation
Cell Line Ontology	CLO	Standard	Cell Cell line Life Science Morphology Ontology and terminology	All	ENCODE OBO	RO BFO	None	OBO Foundry Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Cell Ontology	CL	Standard	Anatomy Annotation Cell Life Science Morphology	Metazoa	ModelDB SCDE CellFinder RGD OBO	CHEBI OBI PATO GO MCCL Plus 6 more...	None	OBO Foundry Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Cellular Microscopy Phenotype Ontology	CMPO	Standard	Cellular component Life Science Microscopy Ontology and terminology Phenotype	All	MitoCheck IDR	GO PATO	None	Cell Migration Standardisation Organisation
Chemical Entities of Biological Interest	CHEBI	Standard	Biochemistry Chemistry Life Science Molecular entity Molecular structure Plus 3 more...	All	GlycoNAVI ChEMBL EcoliWiki: A Wiki-based community resource for Escherichia coli IntAct Rhea Plus 28 more...	ENVO CL OBI GO OBO Format Plus 6 more...	None	OBO Foundry Cell Migration Standardisation Organisation FAIRDOM Community Standards ELIXIR node contributed resources Chemistry
eagle-i Research Resource Ontology	ERO	Standard	Biomedical Science Life Science	All	OBO	BRO VIVO-ISF	Scientific Data Data Policy	OBO Foundry Cell Migration Standardisation Organisation
Experimental Factor Ontology	EFO	Standard	Assay Functional genomics Independent variable Life Science	All	BioSD Expression Atlas SCDE ArrayExpress KUPKB Plus 2 more...	FAANG metadata sample specification standard FAANG metadata experiment specification standard UBERON CSEO	Scientific Data Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Fission Yeast Phenotype Ontology	FYPO	Standard	Gene Ontology (GO) enrichment Genetics Life Science Phenotype Phylogenetics	Schizosaccharomyces pombe	PomBase SYSGRO OBO	SO BTO CL CHEBI PATO Plus 2 more...	None	OBO Foundry Cell Migration Standardisation Organisation
Gene Ontology	GO	Standard	Annotation Biological process Gene Gene Ontology (GO) enrichment Gene expression data Plus 5 more...	All	ADHDgene ASPGD CADRE CAPS-DB dbDEPC Plus 139 more...	GRO ECO ENVO CL CHEBI Plus 22 more...	Cold Spring Harbor Lab Press - Genome Research Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission	OBO Foundry Open Science Prize Cell Migration Standardisation Organisation EMBL-ABR FAIRDOM Community Standards
Human Phenotype Ontology	HP	Standard	Biomedical Science Disease Genetics Phenotype Preclinical and clinical studies	Homo sapiens	GWASdb MGI Orphanet GWAS Central ClinVar Plus 5 more...	PFO PXF Semantic reference model for making rare disease resources linkable ORDO	None	OBO Foundry Cell Migration Standardisation Organisation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack
Mammalian Phenotype Ontology	MP	Standard	Behavior Life Science Ontology and terminology Phenotype	Mammalia	MPD neXtProt RGD MGI MouseMine Plus 4 more...	MIMPP	None	OBO Foundry Cell Migration Standardisation Organisation
Minimal Information About a Cellular Assay	MIACA	Standard	Assay Biomedical Science Cell Cellular assay Life Science	All	None	MIACARM LINCS 2: Primary Cells MIARE-TAB LINCS 2: Cell lines	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations
Minimal Information About T Cell Assays	MIATA	Standard	Assay Biomedical Science Immunity Immunology T cell	Homo sapiens	None	None	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors	Cell Migration Standardisation Organisation Minimum Information for Biological and Biomedical Investigations
Minimum Information About Cell Migration Experiment	MIACME	Standard	Cell biology Cell migration Life Science	All	None	None	None	Cell Migration Standardisation Organisation
NCBI Taxonomy	NCBITAXON	Standard	DNA sequence data Life Science Taxonomic classification	All	GenBank DDBJ ELM Pfam ProtoNet Plus 23 more...	ENVO Project Tycho Pre-compiled Data Format M2B3 UP Taxonomy FAANG metadata sample specification standard Plus 4 more...	Elsevier's Data Policy PLOS Recommended Data Repositories Scientific Data Data Policy	OBO Foundry Cell Migration Standardisation Organisation
Ontology for Biomedical Investigations	OBI	Standard	Assay Biomedical Science Data transformation Device Functional genomics Plus 4 more...	All	SCDE ViPR MTBLS IRD EuPathDB Plus 4 more...	CHEMINF ECO CL FuGE-ML CHEBI Plus 16 more...	Scientific Data Data Policy	OBO Foundry Cell Migration Standardisation Organisation bioCADDIE eTRIKS Standards Starter Pack
Open Microscopy Environment - Tagged Image File Format	OME-TIFF	Standard	Image Life Science	All	JCB DataViewer OMERO CID Liverpool CCI OMERO	OME-XML	None	Cell Migration Standardisation Organisation OME
Phenotypic QualiTy Ontology	PATO	Standard	Life Science Phenotype	All	zfishbook PomBase SCDE ZFIN ANISEED Plus 3 more...	ENVO CL UO CMPO FAANG metadata sample specification standard Plus 3 more...	None	OBO Foundry Cell Migration Standardisation Organisation
PRotein Ontology	PRO	Standard	Life Science Protein	All	UniProtKB ImmPort OBO	UBERON FYPO ProForma	None	OBO Foundry Cell Migration Standardisation Organisation
Sequence Ontology	SO	Standard	Deoxyribonucleic acid (DNA) Gene Genome Life Science Ribonucleic acid (RNA) Plus 1 more...	All	EcoliWiki: A Wiki-based community resource for Escherichia coli FlyBase FungiDB modMine SGD Plus 19 more...	OGI GFF3 FAO FYPO MAGE-TAB	None	OBO Foundry Cell Migration Standardisation Organisation FAIRDOM Community Standards
Statistics Ontology	STATO	Standard	General purpose Statistics and probability	All	OBO	NIDM ISA-Tab	None	OBO Foundry Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Units Ontology	UO	Standard	Life Science Measurement Unit	Not applicable	BIP	PATO ROO EP BAO NEMO	Scientific Data Data Policy	Cell Migration Standardisation Organisation

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