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Cell Migration Standardisation Organisation

Collection of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).

This record is maintained by: agbeltran ORCID , sbesson ORCID

Record added: June 26, 2016, 8:45 a.m..
Record updated: Nov. 12, 2018, 2:02 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 10:00, 27 Mar 2017 (approved):

	'description' has been modified:
		Before: Set of standards and databases relevant for the Cell Migration Standards Organisation (CMSO).
		After: Set of standards and databases relevant for the Cell Migration Standards Organisation (CMSO).

Edits to 'https://fairsharing.org/bsg-c000022' by 'sbesson' at 09:11, 17 May 2017 (approved):

	'description' has been modified:
		Before: Set of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).
		After: Set of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 16:24, 20 Oct 2017 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
		After:
			Chemical Entities of Biological Interest
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
			eagle-i Research Resource Ontology
			Experimental Factor Ontology
			Human Phenotype Ontology
		Added:
			eagle-i Research Resource Ontology
			Experimental Factor Ontology
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 16:26, 20 Oct 2017 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Experimental Factor Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
		After:
			Chemical Entities of Biological Interest
			Experimental Factor Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
			NCBI Taxonomy
			Ontology for Biomedical Investigations
			Statistics Ontology
			Units of measurement
		Added:
			NCBI Taxonomy
			Units of measurement
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 13:58, 25 Jan 2018 (approved):

	'reference_url' has been modified:
		Before: cellmigstandorg.github.io
		After: cellmigstandorg.github.io

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 13:59, 25 Jan 2018 (approved):

	'standards' has been modified:
		Before:
			Ontology for Biomedical Investigations
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Cell Ontology
			Human Phenotype Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Phenotypic QualiTy Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Minimal Information About T Cell Assays
			Units of measurement
			Cell Behavior Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
		After:
			Ontology for Biomedical Investigations
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Cell Ontology
			Human Phenotype Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Phenotypic QualiTy Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Minimal Information About T Cell Assays
			Units of measurement
			Cell Behavior Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
			Sequence Ontology
		Added:
			Sequence Ontology
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 14:02, 12 Nov 2018 (approved):

	'reference_url' has been modified:
		Before: http://cellmigstandorg.github.io
		After: http://github.com/cellMigStandOrg/

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 22:31, 09 Nov 2018 (approved):

	'reference_url' has been modified:
		Before: cellmigstandorg.github.io
		After: http://cellmigstandorg.github.io

	'standards' has been modified:
		Before:
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Sequence Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Minimal Information About a Cellular Assay
			Phenotypic QualiTy Ontology
			Human Phenotype Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Gene Ontology
			Minimal Information About T Cell Assays
			Units Ontology
			Cell Behavior Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			eagle-i Research Resource Ontology
			Cell Culture Ontology
			Statistics Ontology
			Cellular Microscopy Phenotype Ontology
			Open Microscopy Environment - Tagged Image File Format
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
		After:
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Sequence Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Minimal Information About a Cellular Assay
			Phenotypic QualiTy Ontology
			Human Phenotype Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Gene Ontology
			Minimal Information About T Cell Assays
			Units Ontology
			Cell Behavior Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			eagle-i Research Resource Ontology
			Cell Culture Ontology
			Statistics Ontology
			Cellular Microscopy Phenotype Ontology
			Open Microscopy Environment - Tagged Image File Format
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
			biotracks
		Added:
			biotracks
		Removed:

26 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
BioAssay Ontology	BAO	Standard	Biochemistry Biomedical Science Life Science Ontology and Terminology	Assay Biological process Cell Chemical entity Molecular entity Plus 3 more...	All	ChEMBL PubChem LINCS Data Portal RegenBase DTC	CL PATO UO CLO SIO Plus 3 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Advanced Genetics
biotracks	biotracks	Standard	Life Science	Cell migration	All	None	None	None	Cell Migration Standardisation Organisation
Cell Behavior Ontology	CBO	Standard	Life Science Systems Biology	Mathematical model Cell Cell adhesion	All	None	CL ISA-Tab	None	ISO/CD 20691 Collection - DRAFT Cell Migration Standardisation Organisation
Cell Culture Ontology	CCONT	Standard	Biomedical Science Life Science Ontology and Terminology	Cell Cell culture Cell line Disease process modeling	Homo sapiens	None	EFO CLO	None	Cell Migration Standardisation Organisation
Cell Cycle Ontology	CCO	Standard	Functional Genomics Genomics Life Science Ontology and Terminology Proteomics	Cell Cell cycle Molecular function	All	None	ReXO ReTO GeXO	None	RDA Covid-19 WG Resources Cell Migration Standardisation Organisation
Cell Line Ontology	CLO	Standard	Cell Biology Life Science Ontology and Terminology	Cell Cell line Morphology	All	ChEMBL BioGRID ENCODE IEDB OBO Plus 1 more...	ISA-Tab CL MIRO BFO MESH Plus 5 more...	None	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT
Cell Ontology	CL	Standard	Anatomy Cell Biology Life Science Ontology and Terminology	Annotation Cell Morphology	Metazoa	ENCODE ModelDB SCDE CTD CellFinder Plus 10 more...	ISA-Tab ChEBI OBI EFO VSAO Plus 25 more...	None	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack AIRR Data Commons ISO/CD 20691 Collection - DRAFT Systems Medicine
Cellular Microscopy Phenotype Ontology	CMPO	Standard	Cell Biology Ontology and Terminology	Cell Cellular component Microscopy Phenotype	All	MitoCheck IDR	GO IAO APO MP PATO Plus 4 more...	None	Cell Migration Standardisation Organisation
Chemical Entities of Biological Interest	ChEBI	Standard	Biochemistry Chemistry Ontology and Terminology	Natural product Molecular structure Taxonomic classification Molecular entity Small molecule	All	GlycoNAVI BioSD ChEMBL EcoliWiki IntAct Plus 41 more...	CL OBI EFO ENVO TO Plus 17 more...	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards EOSC-Life Chemistry ELIXIR Core Data Resources and Deposition Databases Plus 2 more...
eagle-i Research Resource Ontology	ERO	Standard	Biomedical Science Life Science Ontology and Terminology	Biological sample Protocol Reagent Study design	All	OBO	UBERON BRO OBI IAO VIVO-ISF Plus 3 more...	Advanced Genetics SciData Data Policy	Advanced Genetics Cell Migration Standardisation Organisation
Experimental Factor Ontology	EFO	Standard	Functional Genomics Ontology and Terminology	Experimental measurement Assay Genome-wide association study Study design Independent variable	All	BioSD Expression Atlas SCDE ArrayExpress EGA Plus 12 more...	ChEBI CL NEMO CCONT FAANG metadata sample specification standard Plus 6 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Advanced Genetics RDA Covid-19 WG Resources
Fission Yeast Phenotype Ontology	FYPO	Standard	Genetics Life Science Ontology and Terminology Phylogenetics	Gene Ontology enrichment Phenotype	Schizosaccharomyces pombe	PomBase SYSGRO OBO Cyclebase	CL ChEBI SO BTO GO Plus 4 more...	None	Cell Migration Standardisation Organisation
Gene Ontology	GO	Standard	Life Science Ontology and Terminology	Annotation Biocuration Gene Ontology enrichment Gene expression data Gene functional annotation Plus 9 more...	All	ADHDgene AnimalTFDB ASPGD CADRE CAPS-DB Plus 181 more...	GRO ChEBI CL OBI ECO Plus 40 more...	Cold Spring Harbor Lab Press - Genome Research Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission PeerJ Data and Materials Sharing Policies	Cell Migration Standardisation Organisation Open Science Prize FAIRDOM Community Standards EMBL-ABR ISO/CD 20691 Collection - DRAFT Plus 2 more...
Human Phenotype Ontology	HP	Standard	Biomedical Science Genetics Ontology and Terminology Phenomics Preclinical Studies	Disease Phenotype	Homo sapiens	GWASdb RGD MGI Orphanet GWAS Central Plus 13 more...	MP DOID ORDO BDO GVF Guidelines Plus 9 more...	Advanced Genetics	Cell Migration Standardisation Organisation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Advanced Genetics Plus 2 more...
Mammalian Phenotype Ontology	MP	Standard	Developmental Biology Life Science Ontology and Terminology Physiology	Behavior Phenotype	Mammalia	MPD neXtProt PolyDoms RGD MGI Plus 10 more...	UBERON HP MIMPP GVF Guidelines CMPO Plus 1 more...	None	ISO/CD 20691 Collection - DRAFT Cell Migration Standardisation Organisation
Minimal Information About a Cellular Assay	MIACA	Standard	Biomedical Science Life Science	Assay Cell Cellular assay	All	None	MIARE-TAB LINCS 2: Cell lines LINCS 2: Primary Cells MIACARM	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations ISO/CD 20691 Collection - DRAFT
Minimal Information About T Cell Assays	MIATA	Standard	Biomedical Science Immunology	Immunity T cell Assay	Homo sapiens	None	None	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors	Cell Migration Standardisation Organisation Minimum Information for Biological and Biomedical Investigations ISO/CD 20691 Collection - DRAFT
Minimum Information About Cell Migration Experiment	MIACME	Standard	Cell Biology Life Science	Cell migration	All	None	None	None	Cell Migration Standardisation Organisation
NCBI Taxonomy	NCBITAXON	Standard	Life Science Ontology and Terminology Phylogenetics Taxonomy	Taxonomic classification	All	GenBank DDBJ ELM Pfam ProtoNet Plus 41 more...	ENVO Project Tycho Pre-compiled Data Format TAXRANK PCO UP Taxonomy Plus 12 more...	PLOS Recommended Repositories SciData Data Policy eLife Data Policy	Cell Migration Standardisation Organisation AIRR Data Commons ISO/CD 20691 Collection - DRAFT Systems Medicine
Ontology for Biomedical Investigations	OBI	Standard	Biomedical Science Functional Genomics Life Science Ontology and Terminology	Report Assay Data transformation Device Protocol Plus 3 more...	All	SCDE ViPR IRD VEuPathDB NIF Plus 11 more...	FuGEFlow ISA-Tab ChEBI CL NEMO Plus 38 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation bioCADDIE eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Advanced Genetics Plus 1 more...
Open Microscopy Environment - Tagged Image File Format	OME-TIFF	Standard	Biology Biomedical Science Microbiology	Biological imaging Experimental measurement Resource metadata Experimentally determined Image Plus 3 more...	All	JCB DataViewer LINCS Data Portal IDR CID Liverpool CCI OMERO Plus 2 more...	OME-XML OME-OWL REMBI	None	OME Cell Migration Standardisation Organisation
Phenotypic QualiTy Ontology	PATO	Standard	Biodiversity Biology Ontology and Terminology	Phenotype	All	zfishbook PomBase SCDE NIF ZFIN Plus 7 more...	ISA-Tab CL ENVO TO MPATH Plus 22 more...	None	ISO/CD 20691 Collection - DRAFT Cell Migration Standardisation Organisation
PRotein Ontology	PRO	Standard	Biology Ontology and Terminology	Annotation Biocuration Post-translation modification site prediction Data model Glycosylation Plus 5 more...	All	ChEMBL Reactome MGI NIF UniProtKB Plus 4 more...	CL SO DOID GO IDOBRU Plus 11 more...	None	Cell Migration Standardisation Organisation ISO/CD 20691 Collection - DRAFT Systems Medicine
Sequence Ontology	SO	Standard	Bioinformatics Biology Life Science Ontology and Terminology	Sequence annotation Deoxyribonucleic acid Gene Genome region Plus 2 more...	All	EcoliWiki FlyBase FungiDB modMine SGD Plus 35 more...	MAGE-TAB eVOC CHADO XML GFF3 OPL Plus 21 more...	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards ISO/CD 20691 Collection - DRAFT
Statistics Ontology	STATO	Standard	Data Visualization Ontology and Terminology Statistics	Experimental measurement Graph Protocol Study design	All	OBO	ISA-Tab NIDM GenEpiO DRAO	None	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT
Units Ontology	UO	Standard	Life Science Mathematics Ontology and Terminology	Measurement Unit	Not applicable	ChEMBL BIP MetaSRA	ISA-Tab NEMO PSI-MS CV PATO AgrO Plus 8 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation AIRR Data Commons ISO/CD 20691 Collection - DRAFT Advanced Genetics

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