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Cell Migration Standardisation Organisation

Collection of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).

This record is maintained by: agbeltran ORCID , sbesson ORCID

Record added: June 26, 2016, 8:45 a.m..
Record updated: Nov. 12, 2018, 2:02 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 10:00, 27 Mar 2017 (approved):

	'description' has been modified:
		Before: Set of standards and databases relevant for the Cell Migration Standards Organisation (CMSO).
		After: Set of standards and databases relevant for the Cell Migration Standards Organisation (CMSO).

Edits to 'https://fairsharing.org/bsg-c000022' by 'sbesson' at 09:11, 17 May 2017 (approved):

	'description' has been modified:
		Before: Set of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).
		After: Set of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 16:24, 20 Oct 2017 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
		After:
			Chemical Entities of Biological Interest
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
			eagle-i Research Resource Ontology
			Experimental Factor Ontology
			Human Phenotype Ontology
		Added:
			eagle-i Research Resource Ontology
			Experimental Factor Ontology
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 16:26, 20 Oct 2017 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Experimental Factor Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
		After:
			Chemical Entities of Biological Interest
			Experimental Factor Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
			NCBI Taxonomy
			Ontology for Biomedical Investigations
			Statistics Ontology
			Units of measurement
		Added:
			NCBI Taxonomy
			Units of measurement
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 13:58, 25 Jan 2018 (approved):

	'reference_url' has been modified:
		Before: cellmigstandorg.github.io
		After: cellmigstandorg.github.io

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 13:59, 25 Jan 2018 (approved):

	'standards' has been modified:
		Before:
			Ontology for Biomedical Investigations
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Cell Ontology
			Human Phenotype Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Phenotypic QualiTy Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Minimal Information About T Cell Assays
			Units of measurement
			Cell Behavior Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
		After:
			Ontology for Biomedical Investigations
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Cell Ontology
			Human Phenotype Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Phenotypic QualiTy Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Minimal Information About T Cell Assays
			Units of measurement
			Cell Behavior Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
			Sequence Ontology
		Added:
			Sequence Ontology
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 14:02, 12 Nov 2018 (approved):

	'reference_url' has been modified:
		Before: http://cellmigstandorg.github.io
		After: http://github.com/cellMigStandOrg/

Edits to 'https://fairsharing.org/bsg-c000022' by 'agbeltran' at 22:31, 09 Nov 2018 (approved):

	'reference_url' has been modified:
		Before: cellmigstandorg.github.io
		After: http://cellmigstandorg.github.io

	'standards' has been modified:
		Before:
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Sequence Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Minimal Information About a Cellular Assay
			Phenotypic QualiTy Ontology
			Human Phenotype Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Gene Ontology
			Minimal Information About T Cell Assays
			Units Ontology
			Cell Behavior Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			eagle-i Research Resource Ontology
			Cell Culture Ontology
			Statistics Ontology
			Cellular Microscopy Phenotype Ontology
			Open Microscopy Environment - Tagged Image File Format
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
		After:
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Sequence Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Minimal Information About a Cellular Assay
			Phenotypic QualiTy Ontology
			Human Phenotype Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Gene Ontology
			Minimal Information About T Cell Assays
			Units Ontology
			Cell Behavior Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			eagle-i Research Resource Ontology
			Cell Culture Ontology
			Statistics Ontology
			Cellular Microscopy Phenotype Ontology
			Open Microscopy Environment - Tagged Image File Format
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
			biotracks
		Added:
			biotracks
		Removed:

26 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
BioAssay Ontology	BAO	Standard	Biochemistry Biomedical Science Life Science Ontology and Terminology	Assay Biological process Cell Chemical entity Molecular entity Plus 3 more...	All	ChEMBL PubChem LINCS Data Portal RegenBase	CL SIO PATO ENM BAO-GPCR Plus 3 more...	GGN SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack Genetics & Genomics Next
biotracks	biotracks	Standard	Life Science	Cell migration	All	None	None	None	Cell Migration Standardisation Organisation
Cell Behavior Ontology	CBO	Standard	Life Science Systems Biology	Mathematical model Cell Cell adhesion	All	None	CL ISA-Tab	None	Cell Migration Standardisation Organisation
Cell Culture Ontology	CCONT	Standard	Biomedical Science Life Science Ontology and Terminology	Cell Cell culture Cell line Disease process modeling	Homo sapiens	None	CLO EFO	None	Cell Migration Standardisation Organisation
Cell Cycle Ontology	CCO	Standard	Functional Genomics Genomics Life Science Ontology and Terminology Proteomics	Cell Cell cycle Molecular function	All	None	ReTO GeXO ReXO	None	Cell Migration Standardisation Organisation
Cell Line Ontology	CLO	Standard	Cell Biology Life Science Ontology and Terminology	Cell Cell line Morphology	All	ChEMBL BioGRID ENCODE IEDB OBO Plus 1 more...	CL ISA-Tab MIRO BFO MESH Plus 5 more...	None	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Cell Ontology	CL	Standard	Anatomy Cell Biology Life Science Ontology and Terminology	Annotation Cell Morphology	Metazoa	ENCODE ModelDB SCDE CellFinder RGD Plus 8 more...	EFO ChEBI OBI ISA-Tab VSAO Plus 23 more...	None	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Cellular Microscopy Phenotype Ontology	CMPO	Standard	Cell Biology Ontology and Terminology	Cell Cellular component Microscopy Phenotype	All	MitoCheck IDR	MP PATO IAO GO BFO Plus 4 more...	None	Cell Migration Standardisation Organisation
Chemical Entities of Biological Interest	ChEBI	Standard	Biochemistry Chemistry Ontology and Terminology	Natural product Molecular structure Taxonomic classification Molecular entity Small molecule	All	GlycoNAVI BioSD ChEMBL EcoliWiki: A Wiki-based community resource for Escherichia coli IntAct Plus 38 more...	EFO CL OBI ENVO TO Plus 13 more...	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards Chemistry ELIXIR Core Data Resources and Deposition Databases
eagle-i Research Resource Ontology	ERO	Standard	Biomedical Science Life Science Ontology and Terminology	Biological sample Protocol Reagent Study design	All	OBO	UBERON IAO DRAO BRO VIVO-ISF Plus 1 more...	GGN SciData Data Policy	Cell Migration Standardisation Organisation Genetics & Genomics Next
Experimental Factor Ontology	EFO	Standard	Functional Genomics Ontology and Terminology	Experiment metadata Experimental measurement Assay Independent variable	All	BioSD Expression Atlas SCDE ArrayExpress GWAS Central Plus 10 more...	ChEBI CL NEMO CCONT FAANG metadata sample specification standard Plus 4 more...	GGN SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack Genetics & Genomics Next
Fission Yeast Phenotype Ontology	FYPO	Standard	Genetics Life Science Ontology and Terminology Phylogenetics	Gene Ontology enrichment Phenotype	Schizosaccharomyces pombe	PomBase SYSGRO OBO Cyclebase	ChEBI CL SO BTO PATO Plus 4 more...	None	Cell Migration Standardisation Organisation
Gene Ontology	GO	Standard	Life Science Ontology and Terminology	Annotation Biocuration Gene Ontology enrichment Gene expression data Gene functional annotation Plus 9 more...	All	ADHDgene AnimalTFDB ASPGD CADRE CAPS-DB Plus 170 more...	GRO ChEBI CL OBI ECO Plus 35 more...	Cold Spring Harbor Lab Press - Genome Research Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission	Open Science Prize Cell Migration Standardisation Organisation FAIRDOM Community Standards EMBL-ABR
Human Phenotype Ontology	HP	Standard	Biomedical Science Genetics Ontology and Terminology Phenomics Preclinical Studies	Disease Phenotype	Homo sapiens	GWASdb MGI Orphanet GWAS Central DisGeNET Plus 10 more...	MP DOID ORDO BDO GVF Guidelines Plus 7 more...	GGN	Cell Migration Standardisation Organisation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack Genetics & Genomics Next
Mammalian Phenotype Ontology	MP	Standard	Developmental Biology Life Science Ontology and Terminology Physiology	Behavior Phenotype	Mammalia	MPD neXtProt PolyDoms RGD MGI Plus 8 more...	CMPO GVF Guidelines MIMPP DRAO HP Plus 1 more...	None	Cell Migration Standardisation Organisation
Minimal Information About a Cellular Assay	MIACA	Standard	Biomedical Science Life Science	Assay Cell Cellular assay	All	None	MIACARM LINCS 2: Primary Cells LINCS 2: Cell lines MIARE-TAB	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations
Minimal Information About T Cell Assays	MIATA	Standard	Biomedical Science Immunology	Immunity T cell Assay	Homo sapiens	None	None	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors	Cell Migration Standardisation Organisation Minimum Information for Biological and Biomedical Investigations
Minimum Information About Cell Migration Experiment	MIACME	Standard	Cell Biology Life Science	Cell migration	All	None	None	None	Cell Migration Standardisation Organisation
NCBI Taxonomy	NCBITAXON	Standard	Life Science Ontology and Terminology Phylogenetics Taxonomy	Taxonomic classification	All	GenBank DDBJ ELM Pfam ProtoNet Plus 29 more...	ENVO Project Tycho Pre-compiled Data Format TAXRANK PCO UP Taxonomy Plus 9 more...	Elsevier's Data Policy PLOS Recommended Repositories eLife Data Policy SciData Data Policy	Cell Migration Standardisation Organisation
Ontology for Biomedical Investigations	OBI	Standard	Biomedical Science Functional Genomics Life Science Ontology and Terminology	Experiment metadata Report Assay Data transformation Device Plus 3 more...	All	SCDE ViPR IRD EuPathDB NIF Plus 6 more...	FuGEFlow ChEBI CL NEMO ECO Plus 31 more...	GGN SciData Data Policy	Cell Migration Standardisation Organisation bioCADDIE eTRIKS Standards Starter Pack Genetics & Genomics Next
Open Microscopy Environment - Tagged Image File Format	OME-TIFF	Standard	Biology Biomedical Science	Biological imaging Resource metadata Image Microscopy	All	JCB DataViewer IDR CID Liverpool CCI OMERO NHM Data Portal Plus 1 more...	OME-XML OME-OWL	None	Cell Migration Standardisation Organisation OME
Phenotypic QualiTy Ontology	PATO	Standard	Biodiversity Biology Ontology and Terminology	Phenotype	All	zfishbook PomBase SCDE NIF ZFIN Plus 6 more...	CL ISA-Tab ENVO TO MPATH Plus 19 more...	None	Cell Migration Standardisation Organisation
PRotein Ontology	PRO	Standard	Biology Ontology and Terminology	Annotation Biocuration Post-translation modification site prediction Data model Glycosylation Plus 5 more...	All	ChEMBL Reactome MGI NIF UniProtKB Plus 3 more...	CL SO DOID GO IDOBRU Plus 10 more...	None	Cell Migration Standardisation Organisation
Sequence Ontology	SO	Standard	Bioinformatics Biology Life Science Ontology and Terminology	Sequence Sequence annotation Deoxyribonucleic acid Gene Genome Plus 2 more...	All	EcoliWiki: A Wiki-based community resource for Escherichia coli FlyBase FungiDB modMine SGD Plus 33 more...	MAGE-TAB eVOC CHADO XML GFF3 OPL Plus 17 more...	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards
Statistics Ontology	STATO	Standard	Ontology and Terminology Statistics	Experiment metadata Experimental measurement Graph Study design	All	OBO	NIDM DRAO ISA-Tab	None	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Units Ontology	UO	Standard	Life Science Mathematics Ontology and Terminology	Measurement Unit	Not applicable	ChEMBL BIP MetaSRA	NEMO ISA-Tab PSI-MS CV PATO AgrO Plus 6 more...	GGN SciData Data Policy	Cell Migration Standardisation Organisation Genetics & Genomics Next

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