Name: Cell Migration Standardisation Organisation
Published: 2016-06-26 08:45:13
License: https://creativecommons.org/licenses/by-sa/4.0/. Please link to https://fairsharing.org and https://fairsharing.org/static/img/home/svg/FAIRsharing-logo.svg for attribution.

Cell Migration Standardisation Organisation

Collection of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).

This record is maintained by: agbeltran ORCID , sbesson ORCID

Record added: June 26, 2016, 8:45 a.m..
Record updated: Nov. 12, 2018, 2:02 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 10:00, 27 Mar 2017 (approved):

	'description' has been modified:
		Before: Set of standards and databases relevant for the Cell Migration Standards Organisation (CMSO).
		After: Set of standards and databases relevant for the Cell Migration Standards Organisation (CMSO).

Edits to 'https://fairsharing.org/bsg-c000022' by 'sbesson' at 09:11, 17 May 2017 (approved):

	'description' has been modified:
		Before: Set of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).
		After: Set of standards and databases relevant for the Cell Migration Standardisation Organisation (CMSO).

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 16:24, 20 Oct 2017 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
		After:
			Chemical Entities of Biological Interest
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
			eagle-i Research Resource Ontology
			Experimental Factor Ontology
			Human Phenotype Ontology
		Added:
			eagle-i Research Resource Ontology
			Experimental Factor Ontology
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 16:26, 20 Oct 2017 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Experimental Factor Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
		After:
			Chemical Entities of Biological Interest
			Experimental Factor Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Human Phenotype Ontology
			Phenotypic QualiTy Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Mammalian Phenotype Ontology
			Minimal Information About T Cell Assays
			Cell Behavior Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			Fission Yeast Phenotype Ontology
			NCBI Taxonomy
			Ontology for Biomedical Investigations
			Statistics Ontology
			Units of measurement
		Added:
			NCBI Taxonomy
			Units of measurement
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 13:58, 25 Jan 2018 (approved):

	'reference_url' has been modified:
		Before: cellmigstandorg.github.io
		After: cellmigstandorg.github.io

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 13:59, 25 Jan 2018 (approved):

	'standards' has been modified:
		Before:
			Ontology for Biomedical Investigations
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Cell Ontology
			Human Phenotype Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Phenotypic QualiTy Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Minimal Information About T Cell Assays
			Units of measurement
			Cell Behavior Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
		After:
			Ontology for Biomedical Investigations
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Cell Ontology
			Human Phenotype Ontology
			Minimal Information About a Cellular Assay
			Gene Ontology
			Phenotypic QualiTy Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Minimal Information About T Cell Assays
			Units of measurement
			Cell Behavior Ontology
			Cell Cycle Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Culture Ontology
			eagle-i Research Resource Ontology
			Statistics Ontology
			Open Microscopy Environment - Tagged Image File Format
			Cellular Microscopy Phenotype Ontology
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
			Sequence Ontology
		Added:
			Sequence Ontology
		Removed:

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 14:02, 12 Nov 2018 (approved):

	'reference_url' has been modified:
		Before: http://cellmigstandorg.github.io
		After: http://github.com/cellMigStandOrg/

Edits to 'https://fairsharing.org/bsg-c000022' by 'The FAIRsharing Team' at 22:31, 09 Nov 2018 (approved):

	'reference_url' has been modified:
		Before: cellmigstandorg.github.io
		After: http://cellmigstandorg.github.io

	'standards' has been modified:
		Before:
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Sequence Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Minimal Information About a Cellular Assay
			Phenotypic QualiTy Ontology
			Human Phenotype Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Gene Ontology
			Minimal Information About T Cell Assays
			Units Ontology
			Cell Behavior Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			eagle-i Research Resource Ontology
			Cell Culture Ontology
			Statistics Ontology
			Cellular Microscopy Phenotype Ontology
			Open Microscopy Environment - Tagged Image File Format
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
		After:
			Experimental Factor Ontology
			Chemical Entities of Biological Interest
			Sequence Ontology
			Cell Ontology
			Ontology for Biomedical Investigations
			Minimal Information About a Cellular Assay
			Phenotypic QualiTy Ontology
			Human Phenotype Ontology
			Mammalian Phenotype Ontology
			NCBI Taxonomy
			Gene Ontology
			Minimal Information About T Cell Assays
			Units Ontology
			Cell Behavior Ontology
			BioAssay Ontology
			Cell Line Ontology
			Cell Cycle Ontology
			eagle-i Research Resource Ontology
			Cell Culture Ontology
			Statistics Ontology
			Cellular Microscopy Phenotype Ontology
			Open Microscopy Environment - Tagged Image File Format
			Minimum Information About Cell Migration Experiment
			PRotein Ontology
			Fission Yeast Phenotype Ontology
			biotracks
		Added:
			biotracks
		Removed:

26 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
BioAssay Ontology	BAO	Standard	Biochemistry Biomedical Science Life Sciences	Assay Biological process Cell Chemical entity Molecular entity Plus 3 more...	All	PubChem	UO SIO OWL ENM BAO-GPCR	SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
biotracks	biotracks	Standard	Life Sciences	Cell migration	All	None	None	None	Cell Migration Standardisation Organisation
Cell Behavior Ontology	CBO	Standard	Life Sciences Systems biology	Mathematical model Cell	All	None	None	None	Cell Migration Standardisation Organisation
Cell Culture Ontology	CCONT	Standard	Biomedical Science Life Sciences	Cell Cell culture Cell line Disease process modeling	Homo sapiens	None	None	None	Cell Migration Standardisation Organisation
Cell Cycle Ontology	CCO	Standard	Life Sciences	Cell Cell cycle	All	None	ReXO GeXO ReTO	None	Cell Migration Standardisation Organisation
Cell Line Ontology	CLO	Standard	Life Sciences Ontology and Terminology	Cell Cell line Morphology	All	ENCODE OBO	RO BFO	None	Cell Migration Standardisation Organisation OBO Foundry eTRIKS Standards Starter Pack
Cell Ontology	CL	Standard	Anatomy Life Sciences	Annotation Cell Morphology	Metazoa	ModelDB SCDE CellFinder RGD OBO	OBI CHEBI GO PATO MCCL Plus 6 more...	None	Cell Migration Standardisation Organisation OBO Foundry eTRIKS Standards Starter Pack
Cellular Microscopy Phenotype Ontology	CMPO	Standard	Life Sciences Ontology and Terminology	Cellular component Microscopy Phenotype	All	MitoCheck IDR	PATO GO	None	Cell Migration Standardisation Organisation
Chemical Entities of Biological Interest	CHEBI	Standard	Biochemistry Chemistry Life Sciences	Natural product Molecular structure Taxonomic classification Molecular entity Small molecule	All	GlycoNAVI ChEMBL EcoliWiki: A Wiki-based community resource for Escherichia coli IntAct Rhea Plus 30 more...	OBI ENVO CL GO OBO Format Plus 6 more...	None	Cell Migration Standardisation Organisation OBO Foundry FAIRDOM Community Standards Chemistry ELIXIR Core Data and Data Deposition Resources
eagle-i Research Resource Ontology	ERO	Standard	Biomedical Science Life Sciences	None	All	OBO	BRO VIVO-ISF OBI	SciData Data Policy	Cell Migration Standardisation Organisation OBO Foundry
Experimental Factor Ontology	EFO	Standard	Functional Genomics Life Sciences	Assay Independent variable	All	BioSD Expression Atlas SCDE ArrayExpress KUPKB Plus 3 more...	FAANG metadata sample specification standard FAANG metadata experiment specification standard UBERON CSEO	SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Fission Yeast Phenotype Ontology	FYPO	Standard	Genetics Life Sciences Phylogenetics	Gene Ontology enrichment Phenotype	Schizosaccharomyces pombe	PomBase SYSGRO OBO	SO CHEBI BTO CL GO Plus 2 more...	None	Cell Migration Standardisation Organisation OBO Foundry
Gene Ontology	GO	Standard	Life Sciences	Annotation Gene Ontology enrichment Gene expression data Gene functional annotation Sequence annotation Plus 6 more...	All	ADHDgene ASPGD CADRE CAPS-DB dbDEPC Plus 154 more...	OBI ECO ENVO CHEBI GRO Plus 24 more...	Cold Spring Harbor Lab Press - Genome Research Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission	Open Science Prize Cell Migration Standardisation Organisation OBO Foundry EMBL-ABR FAIRDOM Community Standards
Human Phenotype Ontology	HP	Standard	Biomedical Science Genetics Preclinical and Clinical Studies	Disease Phenotype	Homo sapiens	GWASdb MGI Orphanet GWAS Central ClinVar Plus 5 more...	PFO PXF Semantic reference model for making rare disease resources linkable ORDO	None	Cell Migration Standardisation Organisation OBO Foundry H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack
Mammalian Phenotype Ontology	MP	Standard	Life Sciences Ontology and Terminology	Behavior Phenotype	Mammalia	MPD neXtProt RGD MGI MouseMine Plus 4 more...	MIMPP	None	Cell Migration Standardisation Organisation OBO Foundry
Minimal Information About a Cellular Assay	MIACA	Standard	Biomedical Science Life Sciences	Assay Cell Cellular assay	All	None	MIACARM LINCS 2: Primary Cells LINCS 2: Cell lines MIARE-TAB	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations
Minimal Information About T Cell Assays	MIATA	Standard	Biomedical Science Immunology	Immunity T cell Assay	Homo sapiens	None	None	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors	Cell Migration Standardisation Organisation Minimum Information for Biological and Biomedical Investigations
Minimum Information About Cell Migration Experiment	MIACME	Standard	Cell Biology Life Sciences	Cell migration	All	None	None	None	Cell Migration Standardisation Organisation
NCBI Taxonomy	NCBITAXON	Standard	Life Sciences	Taxonomic classification	All	GenBank DDBJ ELM Pfam ProtoNet Plus 27 more...	ENVO Project Tycho Pre-compiled Data Format Micro B3 UP Taxonomy FAANG metadata sample specification standard Plus 5 more...	PLOS Recommended Repositories Elsevier Data Policy SciData Data Policy	Cell Migration Standardisation Organisation OBO Foundry
Ontology for Biomedical Investigations	OBI	Standard	Biomedical Science Functional Genomics Life Sciences	Report Assay Data transformation Device Protocol Plus 1 more...	All	SCDE ViPR IRD EuPathDB NIF Plus 6 more...	ECO FuGEFlow CHEBI ISA-Tab NEMO Plus 26 more...	SciData Data Policy	Cell Migration Standardisation Organisation OBO Foundry bioCADDIE eTRIKS Standards Starter Pack
Open Microscopy Environment - Tagged Image File Format	OME-TIFF	Standard	Biomedical Science Life Sciences	Image Resource metadata Microscopy	All	JCB DataViewer OMERO CID Liverpool CCI OMERO	OME-XML	None	Cell Migration Standardisation Organisation OME
Phenotypic QualiTy Ontology	PATO	Standard	Life Sciences	Phenotype	All	zfishbook PomBase SCDE ZFIN Open Targets Plus 2 more...	ENVO CL UO CMPO FAANG metadata sample specification standard Plus 4 more...	None	Cell Migration Standardisation Organisation OBO Foundry
PRotein Ontology	PRO	Standard	Life Sciences	Protein	All	UniProtKB ImmPort OBO CP	UBERON FYPO ProForma	None	Cell Migration Standardisation Organisation OBO Foundry
Sequence Ontology	SO	Standard	Life Sciences	Deoxyribonucleic acid Gene Genome Ribonucleic acid Sequence feature	All	EcoliWiki: A Wiki-based community resource for Escherichia coli FlyBase FungiDB modMine SGD Plus 23 more...	OGI GFF3 FAO FYPO MAGE-TAB Plus 1 more...	None	Cell Migration Standardisation Organisation OBO Foundry FAIRDOM Community Standards
Statistics Ontology	STATO	Standard	Statistics and Probability	None	All	OBO	NIDM ISA-Tab	None	Cell Migration Standardisation Organisation OBO Foundry eTRIKS Standards Starter Pack
Units Ontology	UO	Standard	Life Sciences	Measurement Unit	Not applicable	BIP	PATO ROO EP BAO NEMO	SciData Data Policy	Cell Migration Standardisation Organisation

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