Computational Modeling
A collection of the standards and databases covering all aspects of computational modelling. This collection also includes the standards found in the COMBINE Collection.

This record is maintained by: PeteMcQ   ORCID

Record added: May 19, 2016, 11:41 a.m..
Record updated: Oct. 5, 2016, 11:06 a.m. by The FAIRsharing Team.

Taxonomic range

Knowledge Domains 

26 records in view

Registry Name Abbreviation Type Subject Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Biological Pathway eXchange BioPAX Standard None ready
BioModels Ontology BioModels Standard None None uncertain

CellML CellML Standard ready

Chemical Markup Language CML Standard None ready
Computational Neuroscience Ontology CNO Standard None
None None None ready
General Formal Ontology GFO Standard None None ready

Human Physiome Field Markup Language FieldML Standard None ready

JWS Online JWS Online Database ready
Kinetic Simulation Algorithm Ontology KiSAO Standard None ready
Mathematical Modelling Ontology MAMO Standard None
None ready

Minimal Information Required In the Annotation of Models MIRIAM Standard ready

NeuroML NeuroML Standard None ready

Numerical Markup Language NuML Standard None None ready

Ontology and Knowledge Base of Probability Distributions ProbOnto Database None None None ready

Open Modeling EXchange format OMEX Standard None
None ready

Pharmacometrics Markup Language PharmML Standard None ready

Physiome Model Repository PMR Database None ready

Simulation Experiment Description Markup Language SED-ML Standard None ready

Synthetic Biology Open Language SBOL Standard None ready

Synthetic Biology Open Language Visual SBOL Visual Standard None ready

Systems Biology Graphical Notation SBGN Standard None ready

Systems Biology Markup Language SBML Standard ready
Systems Biology Ontology SBO Standard None ready
TErminology for the Description of DYnamics TEDDY Standard None None ready

Tumor model repositories Markup Language TumorML Standard None None ready

Virtual Parts Repository VPR Database None
None None ready