
|
Biological Pathway eXchange
|
BioPAX
|
Standard
|
|
|
|
|
|
None
|
|
|
|
BioModels Ontology
|
BioModels
|
Standard
|
|
|
|
|
None
|
None
|
|
|

|
CellML
|
CellML
|
Standard
|
|
|
|
|
|
|
|
|

|
Chemical Markup Language
|
CML
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Computational Neuroscience Ontology
|
CNO
|
Standard
|
|
None
|
|
None
|
None
|
None
|
|
|
|
General Formal Ontology
|
GFO
|
Standard
|
|
|
|
None
|
|
None
|
|
|

|
Human Physiome Field Markup Language
|
FieldML
|
Standard
|
|
|
|
|
|
None
|
|
|
|
JWS Online
|
JWS Online
|
Database
|
|
|
|
|
|
|
|
|
|
Kinetic Simulation Algorithm Ontology
|
KiSAO
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Mathematical Modelling Ontology
|
MAMO
|
Standard
|
|
None
|
|
|
|
None
|
|
|
|
Minimal Information Required In the Annotation of Models
|
MIRIAM
|
Standard
|
|
|
|
|
|
|
|
|

|
NeuroML
|
NeuroML
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Numerical Markup Language
|
NuML
|
Standard
|
|
|
|
None
|
|
None
|
|
|
|
Ontology and Knowledge Base of Probability Distributions
|
ProbOnto
|
Database
|
|
|
None
|
None
|
|
None
|
|
|

|
Open Modeling EXchange format
|
OMEX
|
Standard
|
None
|
|
|
|
|
None
|
|
|

|
Pharmacometrics Markup Language
|
PharmML
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Physiome Model Repository
|
PMR
|
Database
|
|
|
|
None
|
|
None
|
|
|

|
Simulation Experiment Description Markup Language
|
SED-ML
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Synthetic Biology Open Language
|
SBOL
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Synthetic Biology Open Language Visual
|
SBOL Visual
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Systems Biology Graphical Notation
|
SBGN
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Systems Biology Markup Language
|
SBML
|
Standard
|
|
|
|
|
|
|
|
|
|
Systems Biology Ontology
|
SBO
|
Standard
|
|
|
|
|
|
None
|
|
|
|
TErminology for the Description of DYnamics
|
TEDDY
|
Standard
|
|
|
|
None
|
|
None
|
|
|

|
Tumor model repositories Markup Language
|
TumorML
|
Standard
|
|
|
|
None
|
|
None
|
|
|
|
Virtual Parts Repository
|
VPR
|
Database
|
None
|
None
|
None
|
|
|
None
|
|
|