DNA Microarray

The standards and databases described here accelerate and support the effective sharing and reproducibility of DNA microarray data in the life sciences. These resources facilitate the use of standards and software tools that allow researchers to annotate and share their data more easily.

This record is maintained by: FAIRsharingTeam

Record added: Feb. 16, 2016, 8:18 p.m..
Record updated: May 25, 2017, 7:21 p.m. by The FAIRsharing Team.

Taxonomic range

Scope and data types

Metadata standardization

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5 records in view

Name	Abbreviation	Type	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
ArrayExpress	ArrayExpress	Database	Chromatin immunoprecipitation - DNA microarray (ChIP-chip) Chromatin immunoprecipitation - DNA sequencing (ChIP-seq) DNA microarray Gene expression data Genotyping Plus 4 more...	All	BioSD Expression Atlas SMD DGVA ClinVar Plus 3 more...	EFO MAGE-TAB MIAME/Env MINSEQE OmicsDI XML format Plus 2 more...	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 47 more...	Data Citation Implementation DNA Microarray ELIXIR node contributed resources
Gene Expression Omnibus	GEO	Database	DNA microarray Gene expression data Genome Life Science	All	Nematode.net SMD ImmPort BioSample ENCODE Plus 5 more...	MIAME/Env SOFT MIAME MINiML	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Plus 56 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories DNA Microarray
MIAME Notation in Markup Language	MINiML	Standard	Assay DNA microarray Functional genomics Gene expression data Life Science Plus 1 more...	All	GEO SMIR	MIAME XML	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	DNA Microarray bioCADDIE
MicroArray Gene Expression Tabular Format	MAGE-TAB	Standard	Assay DNA microarray Report	All	BuG@Sbase ArrayExpress SMD	MINSEQE MIAME SO	None	DNA Microarray bioCADDIE FAIRDOM Community Standards
Minimum Information About a Microarray Experiment	MIAME	Standard	DNA microarray Deoxyribonucleic acid (DNA) Gene expression data Genome Life Science Plus 3 more...	All	BuG@Sbase ArrayExpress GermOnline GEO CEBS Plus 5 more...	ISA-Tab MINiML MAGE-TAB MIAME/Env MINSEQE Plus 5 more...	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors EMBO Recommended Databases and Data Standards Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Plus 32 more...	National Child Development Study (UK) DNA Microarray FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations

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