DNA Microarray

The standards and databases described here accelerate and support the effective sharing and reproducibility of DNA microarray data in the life sciences. These resources facilitate the use of standards and software tools that allow researchers to annotate and share their data more easily.

This record is maintained by: FAIRsharingTeam

Record added: Feb. 16, 2016, 8:18 p.m..
Record updated: May 14, 2020, 11:25 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000013' by 'The FAIRsharing Team' at 11:25, 14 May 2020 (approved):

	'standards' has been modified:
		Before:
			MIAME Notation in Markup Language
			MicroArray Gene Expression Tabular Format
			Minimum Information About a Microarray Experiment
		After:
			Microarray and Gene Expression Data Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			MicroArray Gene Expression Tabular Format
			Minimal Information about a high throughput SEQuencing Experiment
			Minimum Information About a Microarray Experiment
		Added:
			Microarray and Gene Expression Data Ontology
			Ontology for Biomedical Investigations
			Minimal Information about a high throughput SEQuencing Experiment
		Removed:

8 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
ArrayExpress	ArrayExpress	Database	Functional Genomics	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Experiment metadata Gene expression data Plus 5 more...	All	BioSD Expression Atlas Bgee ENA GEO Plus 12 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 3 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 51 more...	Data Citation Implementation DNA Microarray EOSC-Life ELIXIR Core Data Resources and Deposition Databases Advanced Genetics Plus 1 more...
Gene Expression Omnibus	GEO	Database	Epidemiology Life Science Virology	DNA microarray Gene expression data Genome	All	NONCODE Nematode.net Bgee ArrayExpress SMD Plus 21 more...	MINiML SOFT MIAME/Env MIAME FAANG metadata experiment specification standard	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 61 more...	NIH-supported data repositories Data Citation Implementation DNA Microarray Open Science Prize Advanced Genetics Plus 3 more...
MIAME Notation in Markup Language	MINiML	Standard	Functional Genomics Life Science	DNA microarray Gene expression data Report Assay	All	GEO SMIR	XML MIAME	Advanced Genetics BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	DNA Microarray bioCADDIE Advanced Genetics RDA Covid-19 WG Resources
~~Microarray and Gene Expression Data Ontology~~	MO	Standard	Life Science Ontology and Terminology	DNA microarray Gene expression data Assay Transcript	All	BuG@Sbase NASC OBO MeRy-B	MAGE-ML MIAME OBI	GTL Program Information and Data Sharing Policy	DNA Microarray
MicroArray Gene Expression Tabular Format	MAGE-TAB	Standard	None	DNA microarray Report Assay	All	BuG@Sbase Expression Atlas ArrayExpress SMD GEA	MINSEQE MIAME SO	None	DNA Microarray FAIRDOM Community Standards bioCADDIE
Minimal Information about a high throughput SEQuencing Experiment	MINSEQE	Standard	Transcriptomics	DNA sequence data Deoxyribonucleic acid Ribonucleic acid	All	ArrayExpress SRA GSA GEA	FASTQ Sequence and Sequence Quality Format MAGE-TAB ISA-Tab FAANG metadata experiment specification standard FAANG metadata analysis specification Plus 2 more...	EMBO Recommended Databases and Data Standards American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors	DNA Microarray FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations RDA Covid-19 WG Resources
Minimum Information About a Microarray Experiment	MIAME	Standard	Life Science Transcriptomics	DNA microarray Experiment metadata Gene expression data Deoxyribonucleic acid Genome Plus 2 more...	All	BuG@Sbase ArrayExpress GermOnline GEO CEBS Plus 6 more...	MAGE-TAB ISA-Tab SOFT MINiML MIAME/Env Plus 9 more...	Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 EMBO Recommended Databases and Data Standards American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors Plus 34 more...	National Child Development Study (UK) DNA Microarray FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations RDA Covid-19 WG Resources
Ontology for Biomedical Investigations	OBI	Standard	Biomedical Science Functional Genomics Life Science Ontology and Terminology	Experiment metadata Report Assay Data transformation Device Plus 3 more...	All	SCDE ViPR IRD EuPathDB NIF Plus 10 more...	FuGEFlow ChEBI CL NEMO ECO Plus 33 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation DNA Microarray bioCADDIE eTRIKS Standards Starter Pack Advanced Genetics Plus 1 more...

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