FAIRsharing Collection: DNA Microarray

DNA Microarray

The standards and databases described here accelerate and support the effective sharing and reproducibility of DNA microarray data in the life sciences. These resources facilitate the use of standards and software tools that allow researchers to annotate and share their data more easily.

This record is maintained by: BioSharingTeam

Record added: Feb. 16, 2016, 8:18 p.m..
Record updated: May 25, 2017, 7:21 p.m. by The FAIRsharing Team.

Taxonomic range

Scope and data types

Metadata standardization

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5 records in view

Name	Abbreviation	Type	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
ArrayExpress	ArrayExpress	Database	Chromatin immunoprecipitation - DNA microarray (ChIP-chip) Chromatin immunoprecipitation - DNA sequencing (ChIP-seq) DNA microarray Gene expression data Genotyping Plus 4 more...	All	BioSD Expression Atlas SMD ClinVar Gemma	MAGE-TAB EFO MINSEQE MIAME/Env MIAME Plus 1 more...	GigaScience - Minimum Standards of Reporting Checklist American Association for the Advancement of Science - Science - Editorial Policies; Data Materials Availability Nature Publishing Group - Nature Biotechnology - Availability of Data and materials Scientific Data's Recommended Data Repositories Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 41 more...	PLOS Wellcome Open Research Scientific Data Data Citation Implementation ELIXIR node contributed resources Plus 5 more...
Gene Expression Omnibus	GEO	Database	DNA microarray Gene expression data Genome Life Science	All	Nematode.net SMD ImmPort BioSample ENCODE Plus 1 more...	MINiML SOFT MIAME/Env MIAME	GigaScience - Minimum Standards of Reporting Checklist American Association for the Advancement of Science - Science - Editorial Policies; Data Materials Availability Nature Publishing Group - Nature Biotechnology - Availability of Data and materials PLOS Recommended Data Repositories Scientific Data's Recommended Data Repositories Plus 44 more...	PLOS Wellcome Open Research Scientific Data Data Citation Implementation NIH-supported data repositories Plus 6 more...
MicroArray Gene Expression Tabular Format	MAGE-TAB	Standard	Assay DNA microarray Report	All	BuG@Sbase ArrayExpress SMD	MIAME	None	DNA Microarray bioCADDIE FAIRDOM Community Standards
Minimum Information About a Microarray Experiment	MIAME	Standard	DNA microarray Deoxyribonucleic acid (DNA) Gene expression data Genome Life Science Plus 3 more...	All	BuG@Sbase ArrayExpress GEO ImmPort	MIAME/Plant MO MIAME/Env MIAME/Nutr MINiML Plus 4 more...	The Plant Cell - Instructions for Authors Lippincott Williams & Wilkins - Circulation Research - Research Guidelines EMBO Press Recommended Databases and Data Standards American Association for the Advancement of Science - Science - Editorial Policies; Data Materials Availability Springer Nature - Research Data Policies Plus 27 more...	EMBO Press National Child Development Study (UK) DNA Microarray Scientific Data FAIRDOM Community Standards Plus 1 more...
MIAME Notation in Markup Language	MINiML	Standard	Assay DNA microarray Functional genomics Gene expression data Life Science Plus 1 more...	All	GEO dbGaP SMIR	MIAME	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	BioMed Central DNA Microarray bioCADDIE GigaScience

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