DNA Microarray

The standards and databases described here accelerate and support the effective sharing and reproducibility of DNA microarray data in the life sciences. These resources facilitate the use of standards and software tools that allow researchers to annotate and share their data more easily.

This record is maintained by: FAIRsharingTeam

Record added: Feb. 16, 2016, 8:18 p.m..
Record updated: May 14, 2020, 11:25 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000013' by 'The FAIRsharing Team' at 11:25, 14 May 2020 (approved):

	'standards' has been modified:
		Before:
			MIAME Notation in Markup Language
			MicroArray Gene Expression Tabular Format
			Minimum Information About a Microarray Experiment
		After:
			Microarray and Gene Expression Data Ontology
			Ontology for Biomedical Investigations
			MIAME Notation in Markup Language
			MicroArray Gene Expression Tabular Format
			Minimal Information about a high throughput SEQuencing Experiment
			Minimum Information About a Microarray Experiment
		Added:
			Microarray and Gene Expression Data Ontology
			Ontology for Biomedical Investigations
			Minimal Information about a high throughput SEQuencing Experiment
		Removed:

8 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
ArrayExpress	ArrayExpress	Database	Functional Genomics	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Experimental measurement Gene expression data Plus 7 more...	All	BioSD Expression Atlas Bgee ENA GEO Plus 14 more...	MAGE-TAB EFO MINSEQE MIAME/Env MIAME Plus 3 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 51 more...	Data Citation Implementation DNA Microarray EOSC-Life ELIXIR Core Data Resources and Deposition Databases Advanced Genetics Plus 1 more...
Gene Expression Omnibus	GEO	Database	Epidemiology Life Science Virology	DNA microarray Gene expression data Genome	All	NONCODE Nematode.net Bgee ArrayExpress SMD Plus 26 more...	FAANG metadata experiment specification standard MIAME/Env MINiML SOFT Common Metadata Elements for Cataloging Biomedical Datasets Plus 1 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 61 more...	NIH-supported data repositories Data Citation Implementation DNA Microarray Open Science Prize Advanced Genetics Plus 3 more...
MIAME Notation in Markup Language	MINiML	Standard	Functional Genomics Life Science	DNA microarray Gene expression data Report Assay	All	GEO SMIR	XML MIAME	Advanced Genetics BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	DNA Microarray bioCADDIE Advanced Genetics RDA Covid-19 WG Resources
~~Microarray and Gene Expression Data Ontology~~	MO	Standard	Life Science Ontology and Terminology	DNA microarray Gene expression data Assay Transcript	All	BuG@Sbase NASC OBO MeRy-B	MAGE-ML OBI MIAME	GTL Program Information and Data Sharing Policy	ISO/CD 20691 Collection - DRAFT DNA Microarray
MicroArray Gene Expression Tabular Format	MAGE-TAB	Standard	None	DNA microarray Report Assay	All	BuG@Sbase Expression Atlas ArrayExpress SMD COSMIC Plus 1 more...	SO MINSEQE MIAME	None	DNA Microarray FAIRDOM Community Standards bioCADDIE ISO/CD 20691 Collection - DRAFT
Minimal Information about a high throughput SEQuencing Experiment	MINSEQE	Standard	Transcriptomics	Chromatin immunoprecipitation - DNA sequencing DNA sequence data RNA sequencing Deoxyribonucleic acid Next generation DNA sequencing Plus 1 more...	All	ArrayExpress SRA GSA GEA	FASTQ Sequence and Sequence Quality Format MAGE-TAB ISA-Tab FAANG metadata analysis specification MIAME Plus 2 more...	EMBO Recommended Databases and Data Standards American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors	DNA Microarray FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations RDA Covid-19 WG Resources
Minimum Information About a Microarray Experiment	MIAME	Standard	Life Science Transcriptomics	DNA microarray Experimental measurement Gene expression data Deoxyribonucleic acid Experimentally determined Plus 4 more...	All	BuG@Sbase ArrayExpress GermOnline GEO CEBS Plus 6 more...	MAGE-TAB ISA-Tab SOFT MINiML MINSEQE Plus 10 more...	Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 EMBO Recommended Databases and Data Standards American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors Plus 34 more...	National Child Development Study (UK) DNA Microarray FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations ISO/CD 20691 Collection - DRAFT Plus 1 more...
Ontology for Biomedical Investigations	OBI	Standard	Biomedical Science Functional Genomics Life Science Ontology and Terminology	Report Assay Data transformation Device Protocol Plus 3 more...	All	SCDE ViPR IRD VEuPathDB NIF Plus 11 more...	ISA-Tab FuGEFlow ChEBI CL NEMO Plus 37 more...	Advanced Genetics SciData Data Policy	Cell Migration Standardisation Organisation DNA Microarray bioCADDIE eTRIKS Standards Starter Pack ISO/CD 20691 Collection - DRAFT Plus 2 more...

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