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ELIXIR Core Data Resources and Deposition Databases

ELIXIR unites Europe’s leading life science organisations in managing and safeguarding the increasing volume of data being generated by publicly funded research. It coordinates, integrates and sustains bioinformatics resources across its member states and enables users in academia and industry to access services that are vital for their research.

This record is maintained by: PeteMcQ ORCID , RachelDrysdale ORCID

Record added: March 9, 2017, 1:28 p.m..
Record updated: May 13, 2019, 2:11 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 09:39, 10 Mar 2017 (approved):

	'type' has been modified:
		Before: Project
		After: Organization Domain list has changed:  Previous values: New values:  Life Science|domain| Bioinformatics tools and formats|| Taxonomy list has changed:  Previous values: New values:  All|http://identifiers.org/taxonomy/1?resource=MIR:00100019

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 14:29, 16 Mar 2017 (approved):

	'name' has been modified:
		Before: ELIXIR core resources
		After: ELIXIR core resources

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 21:07, 17 Mar 2017 (approved):

	'name' has been modified:
		Before: ELIXIR node contributed resources
		After: ELIXIR node contributed resources

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 21:07, 17 Mar 2017 (approved):

	'link_name' has been modified:
		Before:
			ELIXIR
		After:
			ELIXIR
		Added:
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 16:34, 29 Sep 2017 (approved):

	'databases' has been modified:
		Before:
			ChEMBL: a large-scale bioactivity database for drug discovery
			Expression Atlas
			IntAct molecular interaction database
			Pfam Protein Families
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families|domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING: functional protein association networks
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE; a protein domain and family database
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			EBI Metagenomics
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
		After:
			ChEMBL: a large-scale bioactivity database for drug discovery
			Expression Atlas
			IntAct molecular interaction database
			Pfam Protein Families
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families|domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING: functional protein association networks
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE; a protein domain and family database
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			EBI Metagenomics
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		Added:
			BioStudies
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 10:04, 01 Aug 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Pfam Protein Families
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING: functional protein association networks
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE; a protein domain and family database
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify (formerly EBI Metagenomics)
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam Protein Families
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING: functional protein association networks
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE; a protein domain and family database
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify (formerly EBI Metagenomics)
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		Added:
			Molecular INTeraction database
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 10:28, 21 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
			ionomicHUB
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		Added:
			SignaLink
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 10:37, 21 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		Added:
			FAIRsharing
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 14:56, 07 Jan 2019 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
		After:
			Chemical Entities of Biological Interest
			Investigation Study Assay Tabular
		Added:
			Investigation Study Assay Tabular
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 10:44, 21 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			CATH Protein Structure Classification
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		Added:
			CATH Protein Structure Classification
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 09:47, 09 Jan 2019 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			CATH Protein Structure Classification
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			CATH Protein Structure Classification
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			BioCatalogue
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		Added:
			BioCatalogue
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 13:02, 19 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
		Added:
			Eukaryotic Pathogen Database Resources
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 13:58, 19 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
			ionomicHUB
		Added:
			ionomicHUB
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 13:00, 19 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
		Added:
			Pathogen Host Interactions
			Collaborative Open Plant Omics
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 15:21, 10 Jan 2019 (approved):

	'name' has been modified:
		Before: ELIXIR node contributed resources
		After: ELIXIR Core Data and Data Deposition Resources

	'user_defined_tags' has been modified:
		Before:
		After:
			Interoperability
		Added:
			Interoperability
		Removed:

	'onto_disciplines' has been modified:
		Before:
			Bioinformatics
			Biomedical Science
			Environmental Sciences
			Life Sciences
		After:
			Bioinformatics
			Biomedical Science
			Data Integration and Warehousing
			Data Submission, Annotation and Curation
			Environmental Sciences
			Life Sciences
		Added:
			Data Integration and Warehousing
			Data Submission, Annotation and Curation
		Removed:

	'onto_domains' has been modified:
		Before:
		After:
			Biocuration
			literature curation
		Added:
			Biocuration
			literature curation
		Removed:

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Investigation Study Assay Tabular
		After:
			Chemical Entities of Biological Interest
		Added:
		Removed:
			Investigation Study Assay Tabular

	'link_name' has been modified:
		Before: ELIXIR
		After: ELIXIRCDRandDDRs

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			CATH Protein Structure Classification
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			BioCatalogue
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		Added:
		Removed:
			Pathogen Host Interactions
			Eukaryotic Pathogen Database Resources
			Guide to Pharmacology
			CATH Protein Structure Classification
			FAIRsharing
			BioCatalogue
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 15:01, 20 Feb 2019 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		After:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			UniProt Knowledgebase
			CATH Protein Structure Classification
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		Added:
			BioSamples at the European Bioinformatics Institute
			BRENDA
			CATH Protein Structure Classification
			European Variation Archive
			SILVA
		Removed:
			Expression Atlas
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Reactome - a curated knowledgebase of biological pathways
			ImMunoGeneTics Information System
			ProDom
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 15:45, 20 Feb 2019 (approved):

	'reference_url' has been modified:
		Before: https://www.elixir-europe.org/services
		After: https://www.elixir-europe.org/platforms/data/core-data-resources

	'link_name' has been modified:
		Before: ELIXIRCDRandDDRs
		After: ELIXIRCoreDataResourcesandDepositionDatabases

	'name' has been modified:
		Before: ELIXIR Core Data and Data Deposition Resources
		After: ELIXIR Core Data Resources and Deposition Databases

	'databases' has been modified:
		Before:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			UniProt Knowledgebase
			CATH Protein Structure Classification
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		After:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			Orphanet
			UniProt Knowledgebase
			CATH Protein Structure Classification
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		Added:
			Orphanet
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 19:55, 20 Feb 2019 (approved):

	'databases' has been modified:
		Before:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			Orphanet
			UniProt Knowledgebase
			CATH Protein Structure Classification
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		After:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			Orphanet
			UniProt Knowledgebase
			CATH Protein Structure Classification
			Electron Microscopy Data Bank
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		Added:
			Electron Microscopy Data Bank
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 14:11, 13 May 2019 (approved):

	'databases' has been modified:
		Before:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			Orphanet
			UniProt Knowledgebase
			CATH Protein Structure Classification
			Electron Microscopy Data Bank
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		After:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			Molecular INTeraction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			Orphanet
			UniProt Knowledgebase
			CATH Protein Structure Classification
			Electron Microscopy Data Bank
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		Added:
			Molecular INTeraction database
		Removed:

Publications

Identifying ELIXIR Core Data Resources.

Durinx C,McEntyre J,Appel R,Apweiler R,Barlow M,Blomberg N,Cook C,Gasteiger E,Kim JH,Lopez R,Redaschi N,Stockinger H,Teixeira D,Valencia A
F1000Res 2017

View Paper (PubMed) View Publication

26 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
ArrayExpress	ArrayExpress	Database	Functional Genomics	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Experiment metadata Gene expression data Plus 5 more...	All	BioSD Expression Atlas Bgee ENA GEO Plus 12 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 3 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 50 more...	Data Citation Implementation DNA Microarray ELIXIR Core Data Resources and Deposition Databases Advanced Genetics RDA Covid-19 WG Resources
BioModels	BioModels	Database	Life Science Systems Biology	Mathematical model Biological process Molecular interaction Network model	All	JWS Online BiGG Models MNXref OmicsDI	ECO CellML SBGN SED-ML MIRIAM Plus 6 more...	EMBO Recommended Databases and Data Standards Rockefeller University Press - Journal Of Cell Biology - Data Deposition Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition	Systems Medicine ELIXIR Core Data Resources and Deposition Databases
BioSamples at the European Bioinformatics Institute	BioSD	Database	Biology	Biological sample Experiment metadata Disease Genotype Phenotype Plus 1 more...	All	ArrayExpress ENA PRIDE Cellosaurus COVID-19 Data Portal	EFO ChEBI SampleTab BioProject XML Schema FAANG metadata sample specification standard Plus 6 more...	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Gates Open Research Data Guidelines Plus 2 more...	Bioschemas ELIXIR Core Data Resources and Deposition Databases
BioStudies	BioStudies	Database	Biomedical Science Life Science	Experiment metadata	All	ENA BioImage Archive COVID-19 Data Portal	None	PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council	ELIXIR Core Data Resources and Deposition Databases
BRENDA	BRENDA	Database	Life Science	Disease Enzyme Ligand	All	ProGlycProt MTBLS IntEnz BacDive Datanator	SBML BTO	None	ELIXIR Core Data Resources and Deposition Databases
CATH Protein Structure Classification	CATH domain	Database	Life Science	Annotation Classification Curated information Protein Structure	All	FunTree MACiE ProtoNet STAP Gene3D Plus 8 more...	Bioschemas PDB FASTA GO	None	Bioschemas ELIXIR Core Data Resources and Deposition Databases ELIXIR UK node resources
ChEMBL	ChEMBL	Database	Biochemistry Drug Discovery Medicinal Chemistry	Chemical structure Bioactivity Drug Small molecule	All	BindingDB GPCRDB Guide to Pharmacology PubChem Cellosaurus Plus 9 more...	ChEBI BTO CHEMINF UO BAO Plus 5 more...	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy Advanced Genetics Plus 4 more...	Toxicology Data Citation Implementation Bioschemas ELIXIR Core Data Resources and Deposition Databases Advanced Genetics
Chemical Entities of Biological Interest	ChEBI	Standard	Biochemistry Chemistry Ontology and Terminology	Natural product Molecular structure Taxonomic classification Molecular entity Small molecule	All	GlycoNAVI BioSD ChEMBL EcoliWiki: A Wiki-based community resource for Escherichia coli IntAct Plus 38 more...	EFO CL OBI ENVO TO Plus 15 more...	None	Cell Migration Standardisation Organisation FAIRDOM Community Standards Chemistry ELIXIR Core Data Resources and Deposition Databases Systems Medicine
Electron Microscopy Data Bank	EMDB	Database	Biology Epidemiology Virology	Biological imaging X-ray diffraction Electron density map Electron microscopy Microscopy Plus 1 more...	All	CCD PDBe RCSB PDB EMPIAR EMDataResource	PDB PDBx/mmCIF	Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 EMBO Recommended Databases and Data Standards Plus 32 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases COVID-19 Resources RDA Covid-19 WG Resources
Ensembl	Ensembl	Database	Biomedical Science Comparative Genomics Genomics	Gene prediction Genetic map Genome alignment Genome annotation Genomic assembly Plus 4 more...	Caenorhabditis elegans Chordata Drosophila melanogaster Saccharomyces cerevisiae	MitoMiner NONCODE Gene3D neXtProt WikiPathways Plus 55 more...	FASTA GFF3 GTF BAM VCF Plus 5 more...	MNI Open Research UCL Child Open Health Research HRB Open Research American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors AAS Policy Plus 3 more...	RDA Covid-19 WG Resources ELIXIR Core Data Resources and Deposition Databases
Ensembl Genomes	Ensembl Genomes	Database	Comparative Genomics	DNA sequence data Genome alignment Genome annotation Genome visualization Genome	Bacteria Eukaryota Fungi Plantae Vertebrata	TarBase PHI-base Gramene ENA Ensembl Plus 9 more...	NCBITAXON	None	Bioschemas ELIXIR Core Data Resources and Deposition Databases RDA Covid-19 WG Resources
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Functional Genomics Genomics Plus 2 more...	Annotation DNA sequence data Genomic assembly Amino acid sequence Sequence annotation Plus 6 more...	All	GenBank BioSD DDBJ ArrayExpress Europe PMC Plus 14 more...	SRA-XML NCBITAXON MIASPPE ENA Sequence Flat File Format FASTA Plus 6 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 58 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases Advanced Genetics RDA Covid-19 WG Resources
European Variation Archive	EVA	Database	Biomedical Science Genetics Genomics	DNA structural variation Genetic polymorphism Genotype Sequencing Sequence variant	All	ENA EGA dbSNP UniProtKB DGVa Plus 4 more...	SO HGNC	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 26 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases RDA Covid-19 WG Resources
Europe PubMed Central	Europe PMC	Database	Biomedical Science Life Science	Abstract Annotation Bibliography Citation Text mining Plus 1 more...	All	ENA PDBe PMC PubMed UniProtKB Plus 2 more...	Scholix	None	National Child Development Study (UK) Open Science Prize ELIXIR Core Data Resources and Deposition Databases
Human Protein Atlas	HPA	Database	Biomedical Science Life Science Transcriptomics	Biological imaging Medical imaging Protein expression Cell line Cellular localization Plus 6 more...	Homo sapiens	FunCoup MitoMiner neXtProt CRC Atlas HumanMine	SNOMEDCT TFClass Bioschemas	None	Euro-BioImaging Bioschemas ELIXIR Core Data Resources and Deposition Databases RDA Covid-19 WG Resources
IntAct molecular interaction database	IntAct	Database	Biology	Citation Experiment metadata Gene Ontology enrichment Gene name Protein domain Plus 5 more...	All	MINT Gene3D neXtProt APID Interactomes Reactome Plus 19 more...	ChEBI MIRO PSI-PAR XML MITAB GO Plus 5 more...	Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 EMBO Recommended Databases and Data Standards Plus 12 more...	Data Citation Implementation International Molecular Exchange Consortium (IMEx) ELIXIR Core Data Resources and Deposition Databases COVID-19 Resources RDA Covid-19 WG Resources
Integrated resource of protein families, domains and functional sites	InterPro	Database	Bioinformatics Biology	Function analysis Computational predictions Binding motif Protein domain Amino acid sequence Plus 6 more...	All	MitoMiner Pfam ProtoNet SMART Gene3D Plus 32 more...	ENA Sequence Flat File Format PIFRF FASTA GO	None	RDA Covid-19 WG Resources ELIXIR Core Data Resources and Deposition Databases
MetaboLights	MTBLS	Database	Data Submission, Annotation and Curation Metabolomics Structural Biology	Biocuration Biological sample Chemical formula Chemical structure Mass spectrometry spectra Plus 9 more...	All	Rhea WikiPathways BRENDA OmicsDI DES-TOMATO	nmrCV ChEBI ISA-Tab PSI-MS CV BTO Plus 3 more...	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 18 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project ELIXIR Core Data Resources and Deposition Databases Advanced Genetics Plus 1 more...
Molecular INTeraction database	MINT	Database	Life Science	Protein interaction Molecular interaction	All	IntAct APID Interactomes STRING VirHostNet iRefWeb Plus 10 more...	PSI-MI CV MITAB GO PSI-MI XML FASTA Plus 1 more...	Elsevier's Data Policy EMBO Recommended Databases and Data Standards Cold Spring Harbor Lab Press - Genome Research Elsevier - Current Opinion in Cell Biology - Guide for Authors Cell Press - Current Biology - Information for Authors Plus 1 more...	International Molecular Exchange Consortium (IMEx) Bioschemas ELIXIR Core Data Resources and Deposition Databases ELIXIR Non-CDR and Non-Deposition Database
Orphanet	Orphanet	Database	Life Science Ontology and Terminology	Rare disease Disease Drug	Homo sapiens	DIDA MFMD Orphadata	HP SNOMEDCT MESH OMIM Ontology ICD-10 Plus 3 more...	None	ELIXIR Core Data Resources and Deposition Databases ELIXIR Non-CDR and Non-Deposition Database
Protein Data Bank in Europe	PDBe	Database	Bioinformatics Structural Biology	Drug structure Protein structure X-ray diffraction Deoxyribonucleic acid Electron density map Plus 5 more...	All	2P2Idb SNAPPI-DB CCD Europe PMC PDBsum Plus 20 more...	Bioschemas PDBx/mmCIF PDB ChEBI GO	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy HRB Open Research AAS Policy Plus 17 more...	Bioschemas ELIXIR Core Data Resources and Deposition Databases RDA Covid-19 WG Resources
PRoteomics IDEntifications database	PRIDE	Database	Life Science Proteomics	Peptide identification Protein identification Curated information Peptide Protein	All	BioSD Expression Atlas Ensembl ProteomeXchange Cellosaurus Plus 6 more...	mzQuantML mzML HUPO-PSI TraML MIAPE OmicsDI XML format Plus 9 more...	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 33 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases Advanced Genetics
SILVA	SILVA	Database	Life Science Phylogeny	Multiple sequence alignment Oligonucleotide probe annotation Taxonomic classification Next generation DNA sequencing Ribosomal RNA	Archaea Bacteria Eukaryota	BacDive Disbiome MAR RNAcentral	None	None	RDA Covid-19 WG Resources ELIXIR Core Data Resources and Deposition Databases
STRING	STRING	Database	Life Science	Pathway or network prediction Computational predictions Protein interaction Functional association Protein	All	FlyBase IntAct MINT SGD Reactome Plus 23 more...	FASTA MITAB GO MIRO	None	Systems Medicine ELIXIR Core Data Resources and Deposition Databases
The European Genome-phenome Archive	EGA	Database	Biomedical Science Genomics Life Science	DNA sequence data Genetic polymorphism Genome Genotype Phenotype	Homo sapiens	ENA EVA DGVa OmicsDI COVID-19 Data Portal	FASTQ Sequence and Sequence Quality Format BAM OmicsDI XML format MIxS Schema.org Plus 2 more...	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 29 more...	Data Citation Implementation National Child Development Study (UK) Bioschemas ELIXIR Core Data Resources and Deposition Databases Advanced Genetics Plus 2 more...
UniProt Knowledgebase	UniProtKB	Database	Functional Genomics Life Science	Annotation Biocuration Function analysis Gene expression data Gene functional annotation Plus 9 more...	All	DAMPD LegumeIP MitoMiner Pfam ProtoNet Plus 83 more...	ChEBI ECO NCBITAXON GO FASTA Plus 12 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 48 more...	NIH-supported data repositories Data Citation Implementation Open Science Prize International Molecular Exchange Consortium (IMEx) Bioschemas Plus 4 more...

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