ELIXIR Core Data Resources and Deposition Databases

ELIXIR unites Europe’s leading life science organisations in managing and safeguarding the increasing volume of data being generated by publicly funded research. It coordinates, integrates and sustains bioinformatics resources across its member states and enables users in academia and industry to access services that are vital for their research.

This record is maintained by: PeteMcQ ORCID , RachelDrysdale

Record added: March 9, 2017, 1:28 p.m..
Record updated: Feb. 20, 2019, 7:55 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 09:39, 10 Mar 2017 (approved):

	'type' has been modified:
		Before: Project
		After: Organization Domain list has changed:  Previous values: New values:  Life Science|domain| Bioinformatics tools and formats|| Taxonomy list has changed:  Previous values: New values:  All|http://identifiers.org/taxonomy/1?resource=MIR:00100019

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 14:29, 16 Mar 2017 (approved):

	'name' has been modified:
		Before: ELIXIR core resources
		After: ELIXIR core resources

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 21:07, 17 Mar 2017 (approved):

	'name' has been modified:
		Before: ELIXIR node contributed resources
		After: ELIXIR node contributed resources

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 21:07, 17 Mar 2017 (approved):

	'link_name' has been modified:
		Before:
			ELIXIR
		After:
			ELIXIR
		Added:
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 16:34, 29 Sep 2017 (approved):

	'databases' has been modified:
		Before:
			ChEMBL: a large-scale bioactivity database for drug discovery
			Expression Atlas
			IntAct molecular interaction database
			Pfam Protein Families
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families|domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING: functional protein association networks
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE; a protein domain and family database
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			EBI Metagenomics
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
		After:
			ChEMBL: a large-scale bioactivity database for drug discovery
			Expression Atlas
			IntAct molecular interaction database
			Pfam Protein Families
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families|domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING: functional protein association networks
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE; a protein domain and family database
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			EBI Metagenomics
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		Added:
			BioStudies
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 10:04, 01 Aug 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Pfam Protein Families
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING: functional protein association networks
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE; a protein domain and family database
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify (formerly EBI Metagenomics)
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam Protein Families
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING: functional protein association networks
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE; a protein domain and family database
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify (formerly EBI Metagenomics)
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		Added:
			Molecular INTeraction database
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 10:28, 21 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
			ionomicHUB
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		Added:
			SignaLink
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 10:37, 21 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		Added:
			FAIRsharing
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 14:56, 07 Jan 2019 (approved):

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
		After:
			Chemical Entities of Biological Interest
			Investigation Study Assay Tabular
		Added:
			Investigation Study Assay Tabular
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 10:44, 21 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			CATH Protein Structure Classification
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		Added:
			CATH Protein Structure Classification
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 09:47, 09 Jan 2019 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			CATH Protein Structure Classification
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			CATH Protein Structure Classification
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			BioCatalogue
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		Added:
			BioCatalogue
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 13:02, 19 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
		Added:
			Eukaryotic Pathogen Database Resources
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 13:58, 19 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
			ionomicHUB
		Added:
			ionomicHUB
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 13:00, 19 Dec 2018 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			A repository of mathematical models of biological and biomedical systems
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			Collaborative Open Plant Omics
		Added:
			Pathogen Host Interactions
			Collaborative Open Plant Omics
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 15:21, 10 Jan 2019 (approved):

	'name' has been modified:
		Before: ELIXIR node contributed resources
		After: ELIXIR Core Data and Data Deposition Resources

	'user_defined_tags' has been modified:
		Before:
		After:
			Interoperability
		Added:
			Interoperability
		Removed:

	'onto_disciplines' has been modified:
		Before:
			Bioinformatics
			Biomedical Science
			Environmental Sciences
			Life Sciences
		After:
			Bioinformatics
			Biomedical Science
			Data Integration and Warehousing
			Data Submission, Annotation and Curation
			Environmental Sciences
			Life Sciences
		Added:
			Data Integration and Warehousing
			Data Submission, Annotation and Curation
		Removed:

	'onto_domains' has been modified:
		Before:
		After:
			Biocuration
			literature curation
		Added:
			Biocuration
			literature curation
		Removed:

	'standards' has been modified:
		Before:
			Chemical Entities of Biological Interest
			Investigation Study Assay Tabular
		After:
			Chemical Entities of Biological Interest
		Added:
		Removed:
			Investigation Study Assay Tabular

	'link_name' has been modified:
		Before: ELIXIR
		After: ELIXIRCDRandDDRs

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Pathogen Host Interactions
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			Eukaryotic Pathogen Database Resources
			ImMunoGeneTics Information System
			ProDom
			Guide to Pharmacology
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			CATH Protein Structure Classification
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
			FAIRsharing
			BioCatalogue
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink
		After:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		Added:
		Removed:
			Pathogen Host Interactions
			Eukaryotic Pathogen Database Resources
			Guide to Pharmacology
			CATH Protein Structure Classification
			FAIRsharing
			BioCatalogue
			Collaborative Open Plant Omics
			ionomicHUB
			SignaLink

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 15:01, 20 Feb 2019 (approved):

	'databases' has been modified:
		Before:
			ChEMBL
			Expression Atlas
			IntAct molecular interaction database
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			MetaboLights
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Reactome - a curated knowledgebase of biological pathways
			Ensembl
			STRING
			ImMunoGeneTics Information System
			ProDom
			Human Protein Atlas
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			UniProt Knowledgebase
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Ensembl Genomes
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone
			BioStudies
		After:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			UniProt Knowledgebase
			CATH Protein Structure Classification
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		Added:
			BioSamples at the European Bioinformatics Institute
			BRENDA
			CATH Protein Structure Classification
			European Variation Archive
			SILVA
		Removed:
			Expression Atlas
			Molecular INTeraction database
			Pfam
			Rhea
			neXtProt
			Human Endogenous Retrovirus database
			Bgee DataBase for Gene Expression Evolution
			Insertion Sequence Finder
			Gene Ontology Annotation
			Integrated relational Enzyme database
			Reactome - a curated knowledgebase of biological pathways
			ImMunoGeneTics Information System
			ProDom
			Orphanet
			HOGENOM
			PROSITE
			SWISS-MODEL Repository of 3D protein structure models
			Database of Orthologous Groups
			MGnify
			arrayMap - Genome Profiles in Cancer
			Eukaryotic Promoter Database
			Genetic and Genomic Information System
			ValidatorDB
			The Benchmark Energy & Geometry Database
			Swiss-Czech Proteomics Server
			Continuously Automated Model Evaluation
			Sequencing Initiative Suomi
			CRISPRdb
			Database Of Local Biomolecular Conformers
			Enzyme Portal
			IDSM
			LiceBase
			Microbial Genome Annotation & Analysis Platform
			Orthologous MAtrix
			Rfam
			SugarBind
			SwissRegulon
			ViralZone

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 15:45, 20 Feb 2019 (approved):

	'reference_url' has been modified:
		Before: https://www.elixir-europe.org/services
		After: https://www.elixir-europe.org/platforms/data/core-data-resources

	'link_name' has been modified:
		Before: ELIXIRCDRandDDRs
		After: ELIXIRCoreDataResourcesandDepositionDatabases

	'name' has been modified:
		Before: ELIXIR Core Data and Data Deposition Resources
		After: ELIXIR Core Data Resources and Deposition Databases

	'databases' has been modified:
		Before:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			UniProt Knowledgebase
			CATH Protein Structure Classification
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		After:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			Orphanet
			UniProt Knowledgebase
			CATH Protein Structure Classification
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		Added:
			Orphanet
		Removed:

Edits to 'https://fairsharing.org/bsg-c000039' by 'The FAIRsharing Team' at 19:55, 20 Feb 2019 (approved):

	'databases' has been modified:
		Before:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			Orphanet
			UniProt Knowledgebase
			CATH Protein Structure Classification
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		After:
			BioSamples at the European Bioinformatics Institute
			ChEMBL
			IntAct molecular interaction database
			MetaboLights
			BRENDA
			ArrayExpress
			BioModels
			Europe PubMed Central
			European Nucleotide Archive
			Integrated resource of protein families, domains and functional sites
			Protein Data Bank in Europe
			PRoteomics IDEntifications database
			The European Genome-phenome Archive
			Ensembl
			STRING
			Human Protein Atlas
			Orphanet
			UniProt Knowledgebase
			CATH Protein Structure Classification
			Electron Microscopy Data Bank
			European Variation Archive
			Ensembl Genomes
			BioStudies
			SILVA
		Added:
			Electron Microscopy Data Bank
		Removed:

Publications

Identifying ELIXIR Core Data Resources.

Durinx C,McEntyre J,Appel R,Apweiler R,Barlow M,Blomberg N,Cook C,Gasteiger E,Kim JH,Lopez R,Redaschi N,Stockinger H,Teixeira D,Valencia A
F1000Res 2017

View Paper (PubMed) View Publication

25 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
ArrayExpress	ArrayExpress	Database	Life Sciences	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Gene expression data Genotyping Plus 3 more...	All	BioSD Expression Atlas Bgee SMD DGVA Plus 6 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 2 more...	UCL Child Open Health Research EMBO Recommended Databases and Data Standards HRB Open Research PLOS Recommended Repositories MNI Open Research Plus 47 more...	Data Citation Implementation DNA Microarray ELIXIR Core Data Resources and Deposition Databases
BioModels	BioModels	Database	Life Sciences Systems biology	Mathematical model Biological process Molecular interaction Network model	All	JWS Online BiGG Models MNXref OmicsDI	CellML SBGN SED-ML MIRIAM OmicsDI XML format Plus 5 more...	EMBO Recommended Databases and Data Standards Rockefeller University Press - Journal Of Cell Biology - Data Deposition Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition	ELIXIR Core Data Resources and Deposition Databases
BioSamples at the European Bioinformatics Institute	BioSD	Database	Life Sciences	Biological sample annotation	All	ArrayExpress ENA PRIDE	EFO SampleTab BioProject XML Schema FAANG metadata sample specification standard FAANG metadata experiment specification standard Plus 1 more...	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 2 more...	ELIXIR Core Data Resources and Deposition Databases
BioStudies	BioStudies	Database	Biomedical Science Life Sciences	Experiment metadata	All	ENA	None	PLOS Recommended Repositories Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council	ELIXIR Core Data Resources and Deposition Databases
BRENDA	BRENDA	Database	Life Sciences	Enzyme Disease Ligand	All	ProGlycProt MTBLS IntEnz BacDive	SBML BTO	None	ELIXIR Core Data Resources and Deposition Databases
CATH Protein Structure Classification	CATH domain	Database	Life Sciences	Annotation Classification Curated information Protein Structure	All	FunTree MACiE ProtoNet STAP Gene3D Plus 7 more...	Bioschemas GO PDB FASTA	None	ELIXIR Core Data Resources and Deposition Databases ELIXIR UK node resources
ChEMBL	ChEMBL	Database	Biochemistry Drug Discovery Medicinal Chemistry	Chemical structure Bioactivity Drug Small molecule	Not applicable	Guide to Pharmacology CP TargetMine WITHDRAWN	CHEBI	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy SciData Data Policy Plus 3 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases
Chemical Entities of Biological Interest	CHEBI	Standard	Biochemistry Chemistry Life Sciences	Natural product Molecular structure Taxonomic classification Molecular entity Small molecule	All	GlycoNAVI ChEMBL EcoliWiki: A Wiki-based community resource for Escherichia coli IntAct Rhea Plus 30 more...	ENVO OBI CL GO OMIT Plus 8 more...	None	Cell Migration Standardisation Organisation OBO Foundry FAIRDOM Community Standards Chemistry ELIXIR Core Data Resources and Deposition Databases
Electron Microscopy Data Bank	EMDB	Database	Biology Life Sciences	X-ray diffraction Electron density map Electron microscopy Microscopy Structure	All	CCD PDBe RCSB PDB EMPIAR	PDB PDBx/mmCIF	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 30 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases
Ensembl	Ensembl	Database	Biomedical Science Life Sciences	Gene prediction Genome alignment Genome annotation Genomic assembly Genome visualization Plus 2 more...	Caenorhabditis elegans Chordata Drosophila melanogaster Saccharomyces cerevisiae	MitoMiner NONCODE Gene3D neXtProt WikiPathways Plus 50 more...	FASTA GTF GFF3 BAM VCF Plus 5 more...	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Plus 3 more...	ELIXIR Core Data Resources and Deposition Databases
Ensembl Genomes	Ensembl Genomes	Database	Comparative Genomics Life Sciences	DNA sequence data Genome annotation	Bacteria Eukaryota Fungi Plantae Vertebrata	TarBase PHI-base Gramene ENA Ensembl Plus 9 more...	NCBITAXON	None	ELIXIR Core Data Resources and Deposition Databases
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Functional Genomics Genomics Life Sciences Plus 2 more...	Annotation Amino acid sequence Deoxyribonucleic acid Histone Nucleotide Plus 2 more...	All	GenBank BioSD DDBJ Europe PMC EGA Plus 5 more...	SRA-XML NCBITAXON MIASPPE FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 53 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases
European Variation Archive	EVA	Database	Biomedical Science Genetics Genomics Life Sciences	DNA structural variation Genetic polymorphism Genotype Sequencing	All	ENA EGA dbSNP UniProtKB ClinVar Plus 2 more...	HUGO SO	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 25 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases
Europe PubMed Central	Europe PMC	Database	Biomedical Science Life Sciences	Abstract Annotation Bibliography Citation Text mining Plus 1 more...	All	ENA PDBe PMC PubMed UniProtKB Plus 1 more...	None	None	Open Science Prize National Child Development Study (UK) ELIXIR Core Data Resources and Deposition Databases
Human Protein Atlas	HPA	Database	Biomedical Science Life Sciences	Biological imaging Medical imaging Protein Structure	Homo sapiens	FunCoup MitoMiner neXtProt CRC Atlas HumanMine	Bioschemas SNOMEDCT	None	Euro-BioImaging ELIXIR Core Data Resources and Deposition Databases
IntAct molecular interaction database	IntAct	Database	Life Sciences Ontology and Terminology	Citation Experiment metadata Gene Ontology enrichment Gene name Protein domain Plus 5 more...	All	MINT Gene3D neXtProt APID Interactomes Reactome Plus 16 more...	CHEBI MIRO GO MITAB PSI-PAR XML Plus 5 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 10 more...	Data Citation Implementation International Molecular Exchange Consortium (IMEx) ELIXIR Core Data Resources and Deposition Databases
Integrated resource of protein families, domains and functional sites	InterPro	Database	Life Sciences	Function analysis Computational predictions Binding motif Protein domain Amino acid sequence Plus 6 more...	All	MitoMiner Pfam ProtoNet SMART Gene3D Plus 31 more...	GO EMBL sequence format PIFRF FASTA	None	ELIXIR Core Data Resources and Deposition Databases
MetaboLights	MTBLS	Database	Data Submission, Annotation and Curation Life Sciences Metabolomics	Biocuration Biological sample Chemical formula Chemical structure Mass spectrometry spectra Plus 9 more...	All	Rhea WikiPathways BRENDA OmicsDI	nmrCV CHEBI BTO ISA-Tab PSI-MS CV Plus 3 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 16 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project ELIXIR Core Data Resources and Deposition Databases
Orphanet	Orphanet	Database	Life Sciences Ontology and Terminology	Rare disease Disease Drug	Homo sapiens	DIDA MFMD Orphadata	HP SNOMEDCT OMIM Ontology MESH ICD-10 Plus 3 more...	None	ELIXIR Core Data Resources and Deposition Databases ELIXIR Non-CDR and Non-Deposition Database
Protein Data Bank in Europe	PDBe	Database	Bioinformatics Life Sciences	Drug structure Protein structure X-ray diffraction Deoxyribonucleic acid Electron density map Plus 5 more...	All	2P2Idb SNAPPI-DB CCD Europe PMC PDBsum Plus 14 more...	Bioschemas GO PDBx/mmCIF PDB CHEBI	UCL Child Open Health Research HRB Open Research MNI Open Research Elsevier Data Policy AAS Policy Plus 16 more...	ELIXIR Core Data Resources and Deposition Databases
PRoteomics IDEntifications database	PRIDE	Database	Life Sciences Proteomics	Peptide identification Protein identification Curated information Peptide Protein	All	BioSD Ensembl ProteomeXchange jPOSTrepo OmicsDI Plus 2 more...	mzQuantML mzML HUPO-PSI TraML MIAPE OmicsDI XML format Plus 9 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 29 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases
SILVA	SILVA	Database	Life Sciences Phylogeny	Multiple sequence alignment Oligonucleotide probe annotation Taxonomic classification Next generation DNA sequencing Ribosomal RNA	Archaea Bacteria Eukaryota	BacDive	None	None	ELIXIR Core Data Resources and Deposition Databases
STRING	STRING	Database	Life Sciences	Pathway or network prediction Computational predictions Protein interaction Functional association Protein	All	FlyBase IntAct MINT SGD Reactome Plus 20 more...	GO MITAB MIRO FASTA	None	ELIXIR Core Data Resources and Deposition Databases
The European Genome-phenome Archive	EGA	Database	Biomedical Science Genomics Life Sciences	DNA sequence data Genetic polymorphism Genome Genotype Phenotype	Homo sapiens	ENA EVA DGVA OmicsDI	FASTQ Sequence and Sequence Quality Format BAM OmicsDI XML format MIxS Schema.org Plus 1 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 26 more...	Data Citation Implementation National Child Development Study (UK) ELIXIR Core Data Resources and Deposition Databases
UniProt Knowledgebase	UniProtKB	Database	Functional Genomics Life Sciences	Annotation Biocuration Function analysis Gene expression data Gene functional annotation Plus 9 more...	All	DAMPD LegumeIP MitoMiner Pfam ProtoNet Plus 66 more...	ECO CHEBI GO NCBITAXON FASTA Plus 11 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 44 more...	Data Citation Implementation Open Science Prize International Molecular Exchange Consortium (IMEx) ELIXIR Core Data Resources and Deposition Databases

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